Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G21
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 31 0.14
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 30 0.19
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 2.3
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 3.1
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept... 26 4.1
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 26 4.1
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 25 5.4
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 25 9.5
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 25 9.5
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 30.7 bits (66), Expect = 0.14
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -2
Query: 156 QLFKNNIWKNNSRIWKIKVSATRRHALLPVVCRVSAMMGKMF 31
QLF N IWK++ +VSA RR +L P++ + K F
Sbjct: 66 QLFLN-IWKSDKLSGSFRVSAIRRQSLYPIILNAFEYLIKEF 106
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 30.3 bits (65), Expect = 0.19
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 292 FVSVKCFIYFVHIFIW-IFLFRDIFGTIWKARFRFAYC 402
F+ + CFI H+F+W +F + ++ W + + A C
Sbjct: 711 FLCISCFIMRHHLFVWSVFSPKLLYNASWASMYFLAKC 748
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 1.8
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 271 FVGAPKDFV-SVKCF-IYFVHIFIWIFLFRDIFGTIW 375
F + K FV VK + IYF + +I LFR IFGTI+
Sbjct: 38 FFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFGTIF 74
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 199 QNFTVCLQRRQFSTATI*KQYLEK*FANLEN*SFR 95
Q F + LQ + F + I K+Y E +A L+N +FR
Sbjct: 2440 QKFKLVLQLKGFGISLIDKKYEEFAYATLKNFTFR 2474
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 435 LSKIK*ITNPRTVCKSKTCFPYCSKNIPEQKNPNKNV 325
L+K++ T+ + +S CF +C IP +N N ++
Sbjct: 747 LTKLRLKTDKKLDLQSLYCFEFCDGQIPNIQNINMSI 783
>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 306 VFYLFCAHFYLDFFVPGYFWNNM 374
VF LFCA +L +FV G+ + +
Sbjct: 209 VFLLFCAIAFLAYFVGGFVYQRV 231
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 4.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -1
Query: 493 LSCKHTPASLFVRRFLKCGSIENQIN-HKSP--NSMQIENVLSILFQKY 356
LSC ASL + R C S+ N ++ K+P N++Q+ + + KY
Sbjct: 14 LSCSKKKASLRIDRVDGCLSLSNSLDLSKTPDYNNVQLYGFIRLKIYKY 62
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 215 FNVHNTELYRMPPTPPIFDGNYLKTIFGKIIRESGKLKF 99
FNV+N Y++ P + N K + K+I LK+
Sbjct: 60 FNVNNLGFYKVSKDPTLDKPNPAKRLGNKLIGHDDMLKY 98
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 426 FSIEPHFKNRLTNKDAGVCLQESNLSVH 509
FS++P + + ++NKD + L +++ VH
Sbjct: 206 FSLQPWWNDMVSNKDIDLILIPAHVPVH 233
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 512 EMNTEVTLL*AHPSIFICQTVFKMRLYRKSNKSQIPEQYANRKRAF 375
E T + LL A + F MRLYR++NK+ + +++ F
Sbjct: 119 EKITGIVLLHADRVVSTGTVAFIMRLYRETNKTGFIKAFSDDPEQF 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,302,142
Number of Sequences: 5004
Number of extensions: 47832
Number of successful extensions: 123
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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