Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G21
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0312 + 22235287-22235334,22235418-22235535,22235628-222356...    31   0.77 
12_02_1127 - 26334225-26334500,26334600-26334761,26334849-263349...    29   1.8  
06_03_0860 + 25484826-25485758,25486155-25486406                       29   1.8  
01_03_0246 - 14207899-14208052,14208132-14208206,14208682-142088...    28   4.1  
11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203           28   5.4  
06_03_1225 + 28538515-28538721,28538799-28539000,28539241-285394...    27   9.5  

>09_06_0312 +
           22235287-22235334,22235418-22235535,22235628-22235698,
           22235799-22235855,22236271-22236362,22236604-22236651,
           22237397-22237517,22237596-22237642,22237796-22237877,
           22238526-22238611,22238864-22238938,22239018-22239171
          Length = 332

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +3

Query: 306 VFYLFCAHFYLDFFVPGYF----WNNMESTFSICILFGDL*FI*FS 431
           ++  FCA + +D+FV   F    W+ +       ++FGDL FI F+
Sbjct: 179 LYQFFCAWYIVDYFVHEEFMTSTWDIIAERLGFMLVFGDLVFIPFT 224


>12_02_1127 -
           26334225-26334500,26334600-26334761,26334849-26334938,
           26335075-26335236,26335330-26335431,26335562-26335633,
           26335716-26335851,26335939-26336120,26336387-26336406,
           26336440-26336521,26336612-26336713,26336796-26336909,
           26337412-26337462,26337583-26337651,26337972-26338049,
           26338357-26338458,26338785-26338865,26339008-26339109,
           26339217-26339576
          Length = 780

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/51 (25%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
 Frame = +2

Query: 290 ILLV*SVLFILCTFLFGFFCSGIFLEQYG--KHVFDLHTVRGF-VIYLIFD 433
           +L+V +   +  + + GFFC+G+ L Q+G  +++ D+  +  + +++L+F+
Sbjct: 107 VLVVPAFRVVKASPILGFFCAGVVLNQFGLIRNLTDVKLLSEWGILFLLFE 157


>06_03_0860 + 25484826-25485758,25486155-25486406
          Length = 394

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -1

Query: 496 LLSCKHTPASLFVRRFLKCGSIENQINHKSPNSMQIENVLSI 371
           + +CK  P    +  ++  G++   +N K P S+  E +L +
Sbjct: 161 IAACKKPPVYCIITEYMSQGTLRMYLNKKDPYSLSSETILKL 202


>01_03_0246 -
           14207899-14208052,14208132-14208206,14208682-14208801,
           14208905-14208981,14209204-14209285,14209439-14209485,
           14209561-14209681,14210188-14210235,14210478-14210569,
           14211001-14211057,14211203-14211273,14211376-14211493,
           14211574-14211621
          Length = 369

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 306 VFYLFCAHFYLDFFVPGYF----WNNMESTFSICILFGDL*FI*FS 431
           ++  FCA + +D+FV        W+ +       ++FGDL FI F+
Sbjct: 179 LYQFFCAWYIVDYFVHEELMTSTWDIIAERLGFMLVFGDLVFIPFT 224


>11_01_0616 - 4933787-4934533,4935590-4935680,4935719-4936203
          Length = 440

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = +2

Query: 35  IFPIIAETLHTTGSNACRRVAETLIFQIRELFFQILFLNSCRRKL 169
           ++ ++A     T +  C   A T++F+ REL   +   +  RR++
Sbjct: 338 VYLVLAPVSRATAAGVCALAAGTMLFRNRELVLMVSCAHVVRRRM 382


>06_03_1225 +
           28538515-28538721,28538799-28539000,28539241-28539472,
           28539560-28539713,28539792-28540136
          Length = 379

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 502 LRLLS-CKHTPASLFVRRFLKCGSIENQINHKSPNSM 395
           +RLL  C H    + V  F++ GS++N I HK   ++
Sbjct: 107 IRLLGWCIHEKEKILVYEFMQKGSLDNIIFHKRKGAL 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,950,179
Number of Sequences: 37544
Number of extensions: 276404
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)