Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G21
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52777| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018) 28 5.6
SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94) 28 5.6
SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44) 27 7.3
SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8) 27 7.3
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 27 9.7
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 27 9.7
>SB_52777| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 491 LL*AHPSIFICQTVFKMRLYRKSNK 417
+L AH I CQ F +RLYR++NK
Sbjct: 16 VLKAHKIIESCQEAFILRLYRENNK 40
>SB_58068| Best HMM Match : 7tm_1 (HMM E-Value=0.0018)
Length = 241
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 221 VXNFLSFCKIFFLNLCALSVRLKILLV*SVLFILCTFLFGFFCSGIFLEQYGKHVFDLHT 400
V L C IFF +C L + + + F++ L F CS +FL +G + ++
Sbjct: 82 VIKMLITCTIFFA-ICWLPLHV-------LHFLIYFDLMSFLCSPLFLRLFGFWLGHANS 133
Query: 401 VRGFVIYLIFDR 436
++Y+IF++
Sbjct: 134 ALNPILYVIFNK 145
>SB_31763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 396
Score = 27.9 bits (59), Expect = 5.6
Identities = 19/72 (26%), Positives = 35/72 (48%)
Frame = +2
Query: 221 VXNFLSFCKIFFLNLCALSVRLKILLV*SVLFILCTFLFGFFCSGIFLEQYGKHVFDLHT 400
V L C IFF +C L + + + F++ L F CS +FL +G + ++
Sbjct: 237 VIKMLITCTIFFA-ICWLPLHV-------LHFLIYFDLMSFLCSPLFLRLFGFWLGHANS 288
Query: 401 VRGFVIYLIFDR 436
++Y+IF++
Sbjct: 289 ALNPILYVIFNK 300
>SB_10098| Best HMM Match : NADH5_C (HMM E-Value=0.94)
Length = 310
Score = 27.9 bits (59), Expect = 5.6
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Frame = +2
Query: 107 IFQIRELFFQILFLNSCRRKLAALEAYGKVLCCVR*SVVXNFLSFCKIFFLNLCALSVRL 286
++ +R LFF L N R + L V S V ++C +F L + + RL
Sbjct: 40 VYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVIYAYCSLFVL-ITIVHARL 98
Query: 287 KILLV*SVLFIL------CTFLFGFFCSGIFL 364
++ LF+L C F+ +CS +FL
Sbjct: 99 FMIYAYCSLFVLITIVHACLFMIYAYCS-LFL 129
>SB_23460| Best HMM Match : 7tm_1 (HMM E-Value=0.44)
Length = 267
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 396 CKSKTCFPYCS--KNIPEQKNPNKNVHKIN-KTLHTNKIFR 283
CK F +C+ K P +K P +++ K+N K+L +N F+
Sbjct: 132 CKDLFRFCHCNWRKFCPARKTPKRHIKKVNKKSLFSNNNFK 172
>SB_32048| Best HMM Match : NADH5_C (HMM E-Value=3.8)
Length = 347
Score = 27.5 bits (58), Expect = 7.3
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Frame = +2
Query: 107 IFQIRELFFQILFLNSCRRKLAALEAYGKVLCCVR*SVVXNFLSFCKIFFLNLCALSVRL 286
++ +R LFF L N R + L V S V ++C +F L + + RL
Sbjct: 40 VYDLRVLFFVCLNYNCSRASVYDLRVLFFVCLNYNYSRVSVIYAYCSLFVL-ITIVHARL 98
Query: 287 KILLV*SVLFIL------CTFLFGFFCS 352
++ LF+L C F+ +CS
Sbjct: 99 FMIYAYCSLFVLITIVHACLFMIYAYCS 126
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 408 PRTVCKSKTCFPYCSKNIPEQKNPNKNVHKINKTLHTNKI 289
P C T P+CS QKNP K +H+ ++ N+I
Sbjct: 167 PTRRCPDGTNGPFCST---VQKNPYKRIHRCSRDNTENQI 203
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.1 bits (57), Expect = 9.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 316 YFVHIFIWIFLFRDIFGTIWK 378
Y +H+F +F+F ++F ++K
Sbjct: 64 YLIHVFCGLFMFLNVFANLYK 84
>SB_1631| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.1 bits (57), Expect = 9.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = -1
Query: 124 FANLEN*SFRDTPARVTTRRM*SFGYDGEDVRIAM 20
F N EN +F+ + T FG GED+ M
Sbjct: 550 FCNKENDAFKPADCKKTANHFLGFGQQGEDITKGM 584
>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 830
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 277 GAPKDFVSVKCFIYFVHIFIWIFL 348
G P+DF+ +I+FV++ +W +L
Sbjct: 76 GYPRDFIRHLRYIFFVNLDVWEYL 99
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 5 QSHLNHCYANIFPIIAETLHTTGSNA 82
Q HLN+C +P++ + +H +NA
Sbjct: 228 QPHLNYCSEYEYPLLKKIIHHASTNA 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,907,264
Number of Sequences: 59808
Number of extensions: 353693
Number of successful extensions: 820
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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