Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G21
(538 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF016418-3|AAK18905.1| 210|Caenorhabditis elegans Hypothetical ... 29 2.8
AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine r... 28 3.7
Z72509-2|CAA96646.1| 520|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like pr... 27 8.6
AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical... 27 8.6
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 32.7 bits (71), Expect = 0.17
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 FLSFCKIFFLNLCALSVRLKILLV*--SVLFILCTFLFGFFCSGIFLEQYGKHVFDLHTV 403
F +F +I + LS K LLV ++L IL +LF F +G +YG+ VF HT+
Sbjct: 413 FFNFHEICNPKIEGLSKEFKRLLVKLHAILMIL-GWLF-FVPTGFLFARYGRQVFKNHTI 470
Query: 404 RGFVIYLIFDRAA 442
G ++ RA+
Sbjct: 471 YGMFVWFQIHRAS 483
>Z81137-3|CAB03471.1| 338|Caenorhabditis elegans Hypothetical
protein W02D9.4 protein.
Length = 338
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 245 KIFFLNLCALSVRLKILLV*SVLFILCTFLFGFFCSGIFLEQ 370
K+ F+N+ + + LK+ L + FLFGFF G FL +
Sbjct: 264 KLLFINVLSQVIYLKMQCFFPNLKEILLFLFGFFPQGAFLSK 305
>AF016418-3|AAK18905.1| 210|Caenorhabditis elegans Hypothetical
protein C49G7.10 protein.
Length = 210
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -3
Query: 428 KSNKSQIPEQYANRKRAFHIVPKISRNKKIQI-KMC 324
KS ++ PE Y N K A+HI+ +K+Q K C
Sbjct: 114 KSKSAKKPELYQNAKVAYHIITPPKNYEKLQAPKFC 149
>AF078157-14|AAG24081.1| 348|Caenorhabditis elegans Serpentine
receptor, class h protein92 protein.
Length = 348
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 236 SFCKIFFLNLCALSVRLKILLV*SVLFILCTFLFGFFCSGIF 361
S + FF+ + A + I++V + + I+ TFLFG G+F
Sbjct: 252 SLQRSFFIGITAQTCVPFIVIVTTYIIIILTFLFGNLSQGLF 293
>Z72509-2|CAA96646.1| 520|Caenorhabditis elegans Hypothetical
protein F32G8.2 protein.
Length = 520
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -1
Query: 496 LLSCKHTPASLFVRRFLKCGSIENQINHKSPNSMQIENVLSILFQK 359
L+SCK +FV+ F+ G I ++ +S + + ++ +LF K
Sbjct: 152 LVSCKRNEKEVFVKPFVNFGVIPKEVPGESVAVILLPSINHMLFTK 197
>Z50797-1|CAA90671.1| 206|Caenorhabditis elegans Hypothetical
protein T22H6.1 protein.
Length = 206
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 434 YRKSNKSQIPEQYANRKRAFHIVPKISRNKKIQIKMCTK*IKH-FTLTKSLG 282
Y + N ++ Y NRK + H P ++ +++ K +KH +TKS G
Sbjct: 44 YNEENHFKVFSNYLNRKNSSHYSPIAPSYQQALLRLQVKGLKHGEQITKSSG 95
>Z81521-2|CAB04224.1| 514|Caenorhabditis elegans Hypothetical
protein F32A11.2 protein.
Length = 514
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 431 RKSNKSQIPEQYANRKRAFHIVPKISRNKKI 339
R+S S I ANR+ AFH++ +I K++
Sbjct: 240 RRSGNSVICASKANREEAFHMIGRILYAKRV 270
>Z34802-1|CAA84336.1| 531|Caenorhabditis elegans Hypothetical
protein M88.1 protein.
Length = 531
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +3
Query: 108 FSRFANYFSKYCF*IVAVENWRRWRHTVKFCVVY 209
FSRF F C IV + + +W KF V Y
Sbjct: 110 FSRFGKMFQDGCRNIVRNKEFMKWLENEKFDVAY 143
>AF076840-1|AAC95522.1| 514|Caenorhabditis elegans Rad17-like
protein protein.
Length = 514
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 431 RKSNKSQIPEQYANRKRAFHIVPKISRNKKI 339
R+S S I ANR+ AFH++ +I K++
Sbjct: 240 RRSGNSVICASKANREEAFHMIGRILYAKRV 270
>AF016684-16|AAB66213.1| 506|Caenorhabditis elegans Hypothetical
protein F45C12.16 protein.
Length = 506
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 38 FPIIAETLHTTGSNACRRVAETLIFQIRELFFQILFLNSCRRK 166
F + E LH SN C E IF ++++F+ L N C K
Sbjct: 300 FIVNLENLH---SNFCVTYQEMFIFMTQDVYFKNLHANYCEGK 339
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,835,462
Number of Sequences: 27780
Number of extensions: 276275
Number of successful extensions: 752
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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