Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G20
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   1.8  
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    25   5.6  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   7.4  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    24   9.8  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    24   9.8  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    24   9.8  

>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 322 KDETPAESITESTSKESHTAAGPQE 396
           K ETPA  +T  ++K+   A  PQE
Sbjct: 157 KTETPAPKVTSESTKKETAAPPPQE 181


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 79  YVFTFELYL*LNYLQVSIHKSSFV 8
           YVF   LYL  + LQ++ H  SF+
Sbjct: 395 YVFPTPLYLVSDILQLATHNRSFI 418


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 158 VYLVYVTGNVTFFTLRSVVGLYYLIYLCVYLRT 60
           V L  V   + FF+L   + + +L+  C +LRT
Sbjct: 203 VLLCTVRSTLAFFSLFMSLDVCFLLLACAFLRT 235


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 6/21 (28%), Positives = 14/21 (66%)
 Frame = -2

Query: 120 HFAFCSWFILFNLFMCLPSNF 58
           H+ F +WF  ++ ++C  ++F
Sbjct: 338 HYQFYAWFAWYSPYLCYQASF 358


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 344 VSLKALQKNPIPPPAHKKEXLIPDTFIKEPNXQDYSP 454
           +S K    N +PP   K + + P T+ ++   + Y+P
Sbjct: 564 ISRKERYNNLVPPSHDKPKQVKPKTYGRKTGSKHYAP 600


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 158 VYLVYVTGNVTFFTLRSVVGLYYLIYLCV 72
           V    ++ N + +T +  VG+ YLI  CV
Sbjct: 399 VMFAIISSNASGYTKKVTVGVIYLIGYCV 427


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,747
Number of Sequences: 5004
Number of extensions: 31305
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)