Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G20
         (463 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3)                   27   5.7  
SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)                  27   7.6  
SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)                27   10.0 

>SB_28865| Best HMM Match : DUF1565 (HMM E-Value=1.3)
          Length = 367

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 341 KVSLKALQKNPIPPPAHKKEXLIPDTFIKEPNXQ 442
           K  L  L K+  PPP  KKE + P   +K+ + Q
Sbjct: 110 KKRLSRLSKDVTPPPYSKKEIIKPRISVKDGDFQ 143


>SB_24803| Best HMM Match : LRR_1 (HMM E-Value=0.0066)
          Length = 727

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 220 FCGLGVLFSAILKCKLEYLIQYI 152
           FC +  +F +I  CK EY+ +YI
Sbjct: 511 FCDIFEIFGSIRICKFEYIHEYI 533


>SB_9925| Best HMM Match : Kinesin (HMM E-Value=0.00094)
          Length = 1671

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 302 KSNXXSQKM--KHRPKVSLKALQKNPIPPPAHKKEXLIPDTF 421
           K N  S+K   KH  K S  A+   P+P P H ++   P  F
Sbjct: 72  KLNLSSKKKSKKHHVKESSPAVHDAPVPSPRHAQKESSPYPF 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,350,439
Number of Sequences: 59808
Number of extensions: 211396
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)