Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G20
         (463 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01930.2 68415.m00128 expressed protein                             30   0.66 
At2g01930.1 68415.m00127 expressed protein                             30   0.66 
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    27   6.2  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    27   6.2  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    27   6.2  
At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel...    27   8.2  

>At2g01930.2 68415.m00128 expressed protein
          Length = 283

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 SNXXSQKMKHRPKVSLKALQKNPIPPPAHKKE 400
           S   S +M H+P ++    ++NPIPPPA  +E
Sbjct: 94  SGSNSIQMIHQPVLNSSRFEENPIPPPAPCEE 125


>At2g01930.1 68415.m00127 expressed protein
          Length = 283

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 305 SNXXSQKMKHRPKVSLKALQKNPIPPPAHKKE 400
           S   S +M H+P ++    ++NPIPPPA  +E
Sbjct: 94  SGSNSIQMIHQPVLNSSRFEENPIPPPAPCEE 125


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 131 VTFFTLRSVVGLYYLIYLCVYLRTLFV 51
           +T  TLR+ + ++YL ++ + LRT ++
Sbjct: 131 ITASTLRTFIDVFYLAHMALQLRTAYI 157


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 131 VTFFTLRSVVGLYYLIYLCVYLRTLFV 51
           +T  TLR+ + ++YL ++ + LRT ++
Sbjct: 138 ITASTLRTFIDVFYLAHMALQLRTAYI 164


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 131 VTFFTLRSVVGLYYLIYLCVYLRTLFV 51
           +T  TLR+ + ++YL ++ + LRT ++
Sbjct: 138 ITASTLRTFIDVFYLAHMALQLRTAYI 164


>At4g30560.1 68417.m04337 cyclic nucleotide-regulated ion channel,
           putative similar to cyclic nucleotide and
           calmodulin-regulated ion channel cngc6 GI:4581207 from
           [Arabidopsis thaliana]
          Length = 733

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 119 TLRSVVGLYYLIYLCVYLRTLFV 51
           TLR+V+  +YL ++ +  RT FV
Sbjct: 157 TLRTVIDAFYLFHMALRFRTAFV 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,657,123
Number of Sequences: 28952
Number of extensions: 150325
Number of successful extensions: 424
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)