Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G19
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    21   9.7  
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    21   9.7  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   9.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.7  

>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -3

Query: 317 LRSPTKTTCLPLNFFSSSRTSLIWIF*KAFSLG 219
           L +PT T      F+ + + +++W+      LG
Sbjct: 31  LTTPTPTDINSFYFYKTEQFTVLWVLFTMIVLG 63


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 381 DIDLCVQCYPRGL 419
           D+DL  Q +PRGL
Sbjct: 46  DLDLNAQNHPRGL 58


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 RNQLRPQSPTSGA 152
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +3

Query: 114 RNQLRPQSPTSGA 152
           R Q++PQSP+S +
Sbjct: 19  RMQIKPQSPSSSS 31


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,659
Number of Sequences: 336
Number of extensions: 2119
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)