Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G19
         (568 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.17 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.17 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.30 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 337 HKTRVANKQKRPRSXTLTSVYNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTT 516
           H     N   +     L S YN ++  +V  ++++  R+ +KL  SQLI V+L     TT
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTT 77


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 337 HKTRVANKQKRPRSXTLTSVYNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTT 516
           H     N   +     L S YN ++  +V  ++++  R+ +KL  SQLI V+L     TT
Sbjct: 20  HGAVAGNPDAKRLYDDLLSNYNKLVRPVVNTSDVL--RVCIKLKLSQLIDVNLKNQIMTT 77


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 73  DSFETSISQALVELETNSDLKAQLRE 150
           ++  T++S AL EL  N D++ +LRE
Sbjct: 307 ETSSTTMSNALYELALNQDVQKKLRE 332


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 385 LTSVYNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTT 516
           L S YN ++  +V   + +   +++KL  SQLI V+L     TT
Sbjct: 32  LLSNYNKLVRPVVNVTDALT--VKIKLKLSQLIDVNLKNQIMTT 73


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 9   FPPAKVVNDEYEDHQSERC*GGFLRDLDLAGAGRTRNQLRPQSPTSG 149
           FP +   +DE  +   +R       D D+AG  + ++++ P    SG
Sbjct: 104 FPNSSSSDDERPNSIHQRASFSLNTDGDIAGLRKKKHKVNPLLMQSG 150


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 18/71 (25%), Positives = 29/71 (40%)
 Frame = +1

Query: 178 ELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVAN 357
           EL   KS +  +P+P  +    +      + +KK +G    F   +    K S K R  +
Sbjct: 552 ELKRLKSTVSLLPLPLARTPSVMSASSTCKKDKKNAGSGSRFTIYK--ANKASKKKREKS 609

Query: 358 KQKRPRSXTLT 390
             K+ R  T T
Sbjct: 610 SAKKERKATKT 620


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,362
Number of Sequences: 438
Number of extensions: 2460
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)