Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G19
(568 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 167 3e-42
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 167 3e-42
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 166 8e-42
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 161 2e-40
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 161 2e-40
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 29 2.9
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 5.0
At4g08113.1 68417.m01331 myosin heavy chain-related similar to M... 27 8.7
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 8.7
At3g06180.1 68416.m00710 expressed protein 27 8.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 167 bits (407), Expect = 3e-42
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Frame = +1
Query: 43 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 216
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 217 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 396
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 397 YNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSVYXKLTG 567
+ A+LED+ +PAEIV KR R +LDG++++ V LD + E+K++T VY KLTG
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 167 bits (407), Expect = 3e-42
Identities = 86/177 (48%), Positives = 124/177 (70%), Gaps = 2/177 (1%)
Frame = +1
Query: 43 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 216
KI K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 7 KIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVP 66
Query: 217 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 396
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSV 122
Query: 397 YNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSVYXKLTG 567
+ A+LED+ +PAEIV KR R +LDG++++ V LD + E+K++T VY KLTG
Sbjct: 123 HEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTG 179
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 166 bits (404), Expect = 8e-42
Identities = 88/177 (49%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 43 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 216
KI K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 7 KIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVP 66
Query: 217 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 396
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+ TLTSV
Sbjct: 67 FRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSV 122
Query: 397 YNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSVYXKLTG 567
+ A+LED+ FPAEIV KR R +LDGS+++ V LD ++ E+K++T VY KLTG
Sbjct: 123 HEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTG 179
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 161 bits (392), Expect = 2e-40
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 43 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 216
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 217 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 396
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+ TLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 397 YNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSVYXKLTG 567
+ AIL+D+V PAEIV KR R +LDG++++ V LD ++ E+KV+ F +VY KLTG
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 161 bits (392), Expect = 2e-40
Identities = 82/177 (46%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Frame = +1
Query: 43 KIIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVP 216
KI K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 7 KIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVP 66
Query: 217 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSXTLTSV 396
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+ TLTSV
Sbjct: 67 YRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSV 122
Query: 397 YNAILEDLVFPAEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSVYXKLTG 567
+ AIL+D+V PAEIV KR R +LDG++++ V LD ++ E+KV+ F +VY KLTG
Sbjct: 123 HEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTG 179
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 430 AEIVXKRIRVKLDGSQLIXVHLDXNQQTTIEHKVDTFQSV 549
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 178 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 327
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At4g08113.1 68417.m01331 myosin heavy chain-related similar to
Myosin heavy chain, skeletal muscle, extraocular
(MyHC-eo) (SP:Q9UKX3) {Homo sapiens}
Length = 764
Score = 27.1 bits (57), Expect = 8.7
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
Frame = +1
Query: 40 TKIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEI---ELHNKKSIIIY 210
T +KA SF+ I + +EL T+ DL+ E EI EL K +
Sbjct: 554 TSSVKAGQDRKVSFQAEIERLKMELSTSKDLEKGFAEKIGFMEMEIRGEELSKKVVDLTS 613
Query: 211 VPMPKLKAFQKIQIRLVRELEKKFSG 288
V + KA ++ L K +G
Sbjct: 614 VAQGEKKAVHDAKVELAAAYSKLLAG 639
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 110 NSKPTPTSKPNFGSF 154
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
>At3g06180.1 68416.m00710 expressed protein
Length = 241
Score = 27.1 bits (57), Expect = 8.7
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = -3
Query: 152 SSRSWALRSELVSSSTSACEIEVSKESASAPLALMIFVLIVDNFSG 15
+SRS + S SSS+S+ + + K S SA L L+I +L++ FSG
Sbjct: 24 ASRSASNHSSSSSSSSSS--LHLCKHSPSATLDLLILILVL--FSG 65
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,022,254
Number of Sequences: 28952
Number of extensions: 208638
Number of successful extensions: 618
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -