Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G18
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...   123   3e-29
SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit T...    27   1.8  
SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|...    25   7.2  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    25   9.5  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   9.5  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score =  123 bits (296), Expect = 3e-29
 Identities = 70/165 (42%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
 Frame = +2

Query: 155 ILXLYSGIGGMHCAWNESTIKGKVVXAIXINTVANDVYKYNFPETLLFTKNIQSLTPIXI 334
           +L LYSGIGGMH A N + I   +V AI IN  AN++Y  N  + L    +I +LT    
Sbjct: 9   VLELYSGIGGMHYALNLANIPADIVCAIDINPQANEIYNLNHGK-LAKHMDISTLTAKDF 67

Query: 335 XKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIXILXKLNTL-QYILMENVKGFE 511
             +      MSP CQPFTR G   D  DPR+ +FL  + +L  +N L +YIL+ENV+GFE
Sbjct: 68  DAFDCKLWTMSPSCQPFTRIGNRKDILDPRSQAFLNILNVLPHVNNLPEYILIENVQGFE 127

Query: 512 CSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKXN 646
            S       + L  CG+   E +LSP    +PNSR R+Y +A+ N
Sbjct: 128 ESKAAEECRKVLRNCGYNLIEGILSPNQFNIPNSRSRWYGLARLN 172


>SPBC30B4.07c |tfb4||transcription factor TFIIH complex subunit Tfb4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 503 GFECSTVRNLFVEKLTYCGFVYQEFMLSPVS 595
           GF CS   ++F E   +C   + +F + P+S
Sbjct: 262 GFVCSVCLSIFCEPRVHCSTCHTKFTVEPMS 292


>SPAC27E2.01 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 455 LXKLNTLQYILMENVKGFECSTVRNLFVEKLTY 553
           L KL  L+  L++NV GF       LFV +  Y
Sbjct: 378 LKKLIKLRQFLVDNVSGFTTELSNMLFVNEHVY 410


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = -2

Query: 640 FSYTIIPQS*IRHSNTYRTQHKLLIDKSTVSQLFNK*ISNSRTFKP 503
           FS +++PQ    +S++      + ID++   +L N   SNS  F P
Sbjct: 121 FSISLVPQRNFLYSHSSLPPKIISIDRNNRIKLDNSISSNSDNFPP 166


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = -3

Query: 501  LTFSIKIY*RVFNLXNIXMKYKNELVLGSFSSKFFPLRVKGWQGGDMRTV-----SILYF 337
            +TF+  ++  +FN      + K+   LG FS++ F + V G   G    V       ++ 
Sbjct: 793  MTFTCFVFFDMFNALACRSETKSVFKLGIFSNRMFNIAVGGSLIGQALVVYASPFQRIFQ 852

Query: 336  XIXIGVKDCIFLV 298
               IG+KD + L+
Sbjct: 853  TEAIGLKDVLILL 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,004
Number of Sequences: 5004
Number of extensions: 49519
Number of successful extensions: 101
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)