Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G18
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0681 - 24242485-24242560,24242721-24242785,24242874-242430... 133 1e-31
08_01_0914 + 9010613-9013316,9013537-9013748 31 0.61
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 30 1.4
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 1.9
03_03_0258 - 15905847-15905990,15906088-15906244,15906374-159065... 29 4.3
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634... 28 5.6
07_03_0698 - 20765305-20768526 27 9.9
>01_05_0681 -
24242485-24242560,24242721-24242785,24242874-24243029,
24243073-24243121,24243291-24243366,24243456-24243666,
24244038-24244160,24244245-24244363,24244439-24244532,
24245123-24245233,24245336-24245392
Length = 378
Score = 133 bits (322), Expect = 1e-31
Identities = 72/171 (42%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Frame = +2
Query: 131 MEEKMEHXILXLYSGIGGMHCAWNESTIKGKVVXAIXINTVANDVYKYNFPETLLFTKNI 310
ME + +L YSGIGGM + S + +VV A IN VANDVY+ NF + NI
Sbjct: 1 METAVPWKVLEFYSGIGGMRYSLAASGARAEVVEAFDINDVANDVYELNFGHRP-YQGNI 59
Query: 311 QSLTPIXIXKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIXILXKLN-TLQYIL 487
Q+LT + KYK L+SPPCQP+TR G D R SF+ + ++ + Q +
Sbjct: 60 QTLTASDLDKYKAQAWLLSPPCQPYTRQGLQKHSADARAFSFIKILNLMKNMCFPPQMLF 119
Query: 488 MENVKGFECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAK 640
+ENV GFE S + +E L+ F QEF+LSP+ G+P SR RY+C+AK
Sbjct: 120 VENVVGFEVSDTHDQLIEVLSDLNFNTQEFILSPLQFGIPYSRPRYFCLAK 170
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 31.5 bits (68), Expect = 0.61
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = +1
Query: 46 LHIIVFCIVSSASSSHCDMFFFC----KCKLN 129
LH+++FCIV + SS C M +C K KLN
Sbjct: 656 LHVLIFCIVGTLISSMCCMTAYCFIKRKMKLN 687
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 347 IDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIXILXKLNTLQYILMENV 499
+D + PPCQ + + NDP + + F+ I+ L +Y+LMENV
Sbjct: 627 VDVICGGPPCQGISGFNRFRKHNDPLEDEKNKQLVVFMDIVKYLRP-KYVLMENV 680
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Frame = +2
Query: 347 IDTVLMSPPCQPFTRNGKNLDENDP----RTNSFLYFIXILXKLNTLQYILMENVKG--- 505
+D V PPCQ + +N + P + + F+ ++ L +Y+ MENV
Sbjct: 1020 VDVVCGGPPCQGISGYNRNREFEAPFKCEKNKQIIVFMDVVQFLKP-KYVYMENVLDILK 1078
Query: 506 FECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCI 634
F +T+ + +L + + +++ G+P R+R + +
Sbjct: 1079 FADATLARYALSRLVAMHYQARLGIMAAGCYGLPQFRMRVFLL 1121
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Frame = +2
Query: 125 STMEEKMEHXILXLYSGIGGMHCAWNESTIKGKV----VXAIXINTVANDVYKYNFPET 289
S + EKME +L LY G GGM G V AI + +A + ++ N PET
Sbjct: 822 SPVLEKMELSLLDLYCGCGGMSTGLCLGARGGGVNLSARWAIDDDEIACESFRNNHPET 880
>03_03_0258 -
15905847-15905990,15906088-15906244,15906374-15906504,
15906991-15907126,15907193-15907464,15907874-15908169,
15908279-15908646,15908922-15908987,15909064-15909129,
15909226-15909297,15909391-15909459,15909549-15909620,
15909708-15909776,15909874-15909945,15910046-15910178,
15911223-15911361
Length = 753
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 353 TVLMSPPCQPFTRNGKNLDENDP 421
T SPP QP TRN +N + N P
Sbjct: 274 TTSQSPPRQPSTRNPRNRNRNPP 296
>03_02_0199 -
6347980-6348225,6348300-6348341,6348824-6348978,
6349369-6349475,6349608-6349733,6349809-6349890,
6350057-6350130,6351184-6352631,6353391-6353540,
6353664-6353906,6354009-6354266,6355554-6356015
Length = 1130
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 467 NTLQYILMENVKGFECSTVRNLFVEKLTYCGFVYQ 571
NT +Y L+E+ E ++ + EK +CG+++Q
Sbjct: 810 NTEKYKLIEDFFNLEIASDASEICEKTAFCGYIFQ 844
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 597 TLTGLNINS**TNPQ*VNFSTNKFRTVEHSNPLTFSIKI 481
+LT L + NPQ N K + EHSN +TF++K+
Sbjct: 1031 SLTHLELKGGTCNPQ--NLEKLKRKVSEHSNGITFTLKL 1067
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,779,445
Number of Sequences: 37544
Number of extensions: 266848
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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