Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G18
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   29   4.4  
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   29   4.4  
SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)             29   4.4  
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                   28   5.8  
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)                   28   5.8  
SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)                        28   5.8  
SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)           28   5.8  
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)                 28   5.8  
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)                   28   5.8  
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)                    28   5.8  
SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)                    28   5.8  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)          28   7.6  

>SB_39639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 350 DTVLMSPPCQPFTRNGKNLDENDPRTNS 433
           +T+  SPP  P TRN      NDPRT +
Sbjct: 114 ETIPQSPPTDPGTRNDLYRTRNDPRTRN 141


>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 696

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 275 LAVKDLSCHELYELNSDCETVWIKVSINRTKHVYIGAFY 313


>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 822

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 275 LAVKDLSCHELYELNSDCETVWIKVSINRTKHVYIGAFY 313


>SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
          Length = 547

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 15  LAVKDLSCHELYELNSDCETVWIKVSINRTKHVYIGAFY 53


>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 913

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 254 LAVKDLSCHELYELNSDCETVWIKVSINRTKHVYIGAFY 292


>SB_36818| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 629

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 104 FFFVNVSSTMEEKMEHXILXLYSGIGGMHCAWNES-----TIKGKVVXAIXINTVANDVY 268
           F  V +S   EE M   +L LY   G      N       TI GK++  I +N +   V 
Sbjct: 139 FHSVLISIWDEEVMPADLLALYKNKGTRTVCENHRGISLLTIAGKILARIMLNRLIPSVA 198

Query: 269 KYNFPET 289
           + N PE+
Sbjct: 199 EKNLPES 205


>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
          Length = 790

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 271 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 309


>SB_15614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 153 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 191


>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1126

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 257 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 295


>SB_55616| Best HMM Match : Exo_endo_phos (HMM E-Value=0.032)
          Length = 296

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 150 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 188


>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 343 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 381


>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
          Length = 832

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 15  LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 53


>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
          Length = 345

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +3

Query: 342 IKLTQFSCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           + +   SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 275 LAVKDLSCHELYELNSDCETVWIKVSINRRKHVYIGAFY 313


>SB_8130| Best HMM Match : RVT_1 (HMM E-Value=8e-35)
          Length = 869

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
 Frame = +2

Query: 104 FFFVNVSSTMEEKMEHXILXLYSGIGGMHCAWNES-----TIKGKVVXAIXINTVANDVY 268
           F  V +S   EE M   +L LY   G      N       TI GK++  I +N +   V 
Sbjct: 399 FHSVLISIWDEEVMPADLLALYKNKGTRTVCENHRGISLLTIAGKILARIMLNRLIPSVA 458

Query: 269 KYNFPET 289
           + N PE+
Sbjct: 459 EKNLPES 465


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 434 FLYF-IXILXKLNTLQYILMENVKGFECSTVRNLFVEKLTYC 556
           F++F + +L KL+ L  ++   + GF CS V      K T C
Sbjct: 473 FIFFMVYLLAKLHVLTALVAGFIVGFVCSIVFGFLDRKRTLC 514


>SB_12693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0014)
          Length = 413

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 360 SCHHLASLLLAMEKIWMKM-IQEPTHFYISXIY 455
           SCH L  L    E +W+K+ I    H YI   Y
Sbjct: 197 SCHELYKLNSDCETVWIKVSINRRKHVYIGAFY 229


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,999,465
Number of Sequences: 59808
Number of extensions: 338931
Number of successful extensions: 666
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)