Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G18
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase fam...   136   1e-32
At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    29   2.0  

>At5g25480.1 68418.m03032 C-5 cytosine-specific DNA methylase family
           protein contains Pfam profile PF00145: C-5
           cytosine-specific DNA methylase
          Length = 383

 Score =  136 bits (329), Expect = 1e-32
 Identities = 75/171 (43%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
 Frame = +2

Query: 131 MEEKMEHXILXLYSGIGGMHCAWNESTIKGKVVXAIXINTVANDVYKYNFPETLLFTKNI 310
           + EK    +L  YSGIGGM  +   S I  +VV A  IN  ANDVY++NF     +  NI
Sbjct: 9   INEKKPWQVLEFYSGIGGMRYSLMASGIVSEVVEAFEINDSANDVYQHNFKHRP-YQGNI 67

Query: 311 QSLTPIXIXKYKIDTVLMSPPCQPFTRNGKNLDENDPRTNSFLYFIXILXKLNTL-QYIL 487
           QSLT   + KY  D  L+SPPCQP+TR G      D R  SFL  + ++       Q + 
Sbjct: 68  QSLTAADLDKYNADAWLLSPPCQPYTRQGLQKHSGDARAFSFLRILELIPHTTKPPQMLF 127

Query: 488 MENVKGFECSTVRNLFVEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAK 640
           +ENV GFE S      +  LT   +V QEF+LSP+  GVP SR RY+C+AK
Sbjct: 128 VENVVGFETSDTHMEMIGTLTKLDYVTQEFILSPLQFGVPYSRPRYFCLAK 178


>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
            putative similar to cytosine-5 methyltransferase (METII)
            [Arabidopsis thaliana] GI:6523846; contains Pfam profiles
            PF01426: BAH domain, PF00145: C-5 cytosine-specific DNA
            methylase
          Length = 1404

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
 Frame = +2

Query: 344  KIDTVLMSPPCQPFTRNGKNLDE--NDPRTNSFLYFIXILXKLNTLQYILMENVKGFECS 517
            ++D +   PPCQ F+R  +  D   +  +    L F+         +Y L+ENVK F   
Sbjct: 1075 QVDFISGGPPCQGFSRLNRFSDGSWSKNQCQMILAFLSFADYFRP-KYFLLENVKTFVSF 1133

Query: 518  TVRNLF---VEKLTYCGFVYQEFMLSPVSVGVPNSRLRYYCIAKXNN 649
               + F   V  L   G+  +  +L   + G+   R R +  A   N
Sbjct: 1134 NEGHTFHLTVASLLEMGYQVRFGLLEAGAYGISQPRKRAFIWAAAPN 1180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,635,489
Number of Sequences: 28952
Number of extensions: 239485
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)