Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G16
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_55734| Best HMM Match : Nsp1_C (HMM E-Value=0.36) 29 2.2
SB_25019| Best HMM Match : Syntaxin (HMM E-Value=6.4) 29 2.2
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83) 28 6.9
SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23) 28 6.9
SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38) 28 6.9
SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23) 28 6.9
SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13) 27 9.1
>SB_52294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 394
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 178 YGVGVVNRYALFLDDETDPLDALKAREQA 264
Y +GV NR+ L L DE DP K E+A
Sbjct: 6 YSIGVNNRFGLLLSDEEDPETTFKESEKA 34
>SB_55734| Best HMM Match : Nsp1_C (HMM E-Value=0.36)
Length = 295
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ SK +S QLE
Sbjct: 148 KLQGEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSKTNKELASYIDQLER 207
Query: 175 S 177
S
Sbjct: 208 S 208
>SB_25019| Best HMM Match : Syntaxin (HMM E-Value=6.4)
Length = 128
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ SK +S QLE
Sbjct: 25 KLQDEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSKTNKELASYIDQLER 84
Query: 175 S 177
S
Sbjct: 85 S 85
>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 164 CDPLDDLITQYLDVSWITFRAASKATFCLILLIS 63
C PLDD + + +W++ AAS T C +LL S
Sbjct: 5 CFPLDDFVPVNIS-AWLSAFAASNGTTCKMLLCS 37
>SB_7108| Best HMM Match : Pili_assembly_C (HMM E-Value=0.83)
Length = 401
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ S+ +S QLE
Sbjct: 25 KLQDEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSETNKELASYIDQLER 84
Query: 175 S 177
S
Sbjct: 85 S 85
>SB_49480| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 343 TVPTRKGIKETQNVKSQDIKSGEQQKG 423
T TR +K+ NVK D +SG+ Q G
Sbjct: 7 TDSTRINVKDMTNVKKDDTRSGQTQAG 33
>SB_41251| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
Length = 251
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ S+ +S QLE
Sbjct: 148 KLQDEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSETNKELASYIDQLER 207
Query: 175 S 177
S
Sbjct: 208 S 208
>SB_37926| Best HMM Match : Nsp1_C (HMM E-Value=0.38)
Length = 295
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ S+ +S QLE
Sbjct: 148 KLQDEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSETNKELASYIDQLER 207
Query: 175 S 177
S
Sbjct: 208 S 208
>SB_13870| Best HMM Match : Nsp1_C (HMM E-Value=0.23)
Length = 251
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +1
Query: 1 RLYSSFVIWRSSCSNRSAILNEINKIRQNVALLAARK--VIQLTSKYCVIKSSRGSQLEN 174
+L V W++ C N A +E+ K Q+V + + RK +IQ S+ +S QLE
Sbjct: 148 KLQDEIVNWKARCHNLEARSSELYKEMQSVLMESKRKDNIIQDLSETNKELASYIDQLER 207
Query: 175 S 177
S
Sbjct: 208 S 208
>SB_19759| Best HMM Match : HATPase_c (HMM E-Value=1.1e-13)
Length = 295
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 362 PFRVGTVTPLAGLGSGLP 309
P GTV PLAG G GLP
Sbjct: 180 PSTSGTVAPLAGYGYGLP 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.129 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,675,409
Number of Sequences: 59808
Number of extensions: 273387
Number of successful extensions: 409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -