Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G16
         (612 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13390.1 68416.m01684 multi-copper oxidase type I family prot...    30   1.4  
At1g55570.1 68414.m06360 multi-copper oxidase type I family prot...    30   1.4  
At4g33450.1 68417.m04752 myb family transcription factor (MYB69)...    28   5.6  
At3g07980.1 68416.m00975 protein kinase, putative similar to MAP...    27   7.4  
At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing prote...    27   7.4  
At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical ...    27   9.8  

>At3g13390.1 68416.m01684 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 554

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 58  LNEINKIRQNVALLAARKVIQLTSKYCVIKSSRGSQLENSYG-VGVVNRYALFLDDETDP 234
           LN+    R N+   AAR   Q +  Y  I  +R  +L N+ G V    RYAL     TDP
Sbjct: 321 LNQFRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGKLRYALNGVSHTDP 380

Query: 235 LDALKARE 258
              LK  E
Sbjct: 381 ETPLKLAE 388


>At1g55570.1 68414.m06360 multi-copper oxidase type I family protein
           nearly identical to pollen-specific BP10 protein
           [SP|Q00624][Brassica napus]; contains Multicopper
           oxidase domain PF00394
          Length = 555

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +1

Query: 58  LNEINKIRQNVALLAARKVIQLTSKYCVIKSSRGSQLENSYG-VGVVNRYALFLDDETDP 234
           LN+    R N+   AAR   Q +  Y  I  +R  +L N+ G V    RYAL     TDP
Sbjct: 322 LNQYRSFRWNLTASAARPNPQGSYHYGKINITRTIKLVNTQGKVDGKLRYALSGVSHTDP 381

Query: 235 LDALKARE 258
              LK  E
Sbjct: 382 ETPLKLAE 389


>At4g33450.1 68417.m04752 myb family transcription factor (MYB69)
           contains PFAM profile: Myb DNA binding domain PF00249;
           identical to cDNA  putative transcription factor (MYB69)
           mRNA, partial cds GI:3941495
          Length = 250

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -3

Query: 304 SLFRLLWSSF*APSPALALLTHQEDRSHRPRKERICSLLPHRRNSP 167
           S F   W +  +PS +L  L        R RK++ C L P+   SP
Sbjct: 130 STFNQTWHTVLSPSSSLTRLNRSHFGLWRYRKDKSCGLWPYSFVSP 175


>At3g07980.1 68416.m00975 protein kinase, putative similar to MAP3K
           epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1367

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 238 QEDRSHRPRKERICSLLPHRRNSPVVILLMI*SHNI*MLVGLLSAQLVRRHFVLFY*FHL 59
           + DRS   RKE    L    ++SP+ + + I    I +LVG L A   +   ++      
Sbjct: 676 ERDRSREIRKEAAYFLQQLCQSSPLTLQMFISCRGIPVLVGFLEADYAKHREMVHLAIDG 735

Query: 58  IWR 50
           +W+
Sbjct: 736 MWQ 738


>At1g71500.1 68414.m08265 Rieske [2Fe-2S] domain-containing protein
           contains Pfam profile PF00355: iron-sulfur
           cluster-binding protein, rieske family
          Length = 287

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 230 SVSSSKKRAYLFTTPTP*EFSSCDPLDDLITQYL 129
           + SSS  R Y FTTP P  F    PL   +  YL
Sbjct: 4   TASSSLPRNYSFTTPRPSSFIRGPPLARTLPLYL 37


>At3g13530.1 68416.m01701 MAP3K epsilon protein kinase identical to
           MAP3K epsilon protein kinase [Arabidopsis thaliana]
           gi|3549652|emb|CAA12272
          Length = 1368

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 238 QEDRSHRPRKERICSLLPHRRNSPVVILLMI*SHNI*MLVGLLSAQLVR 92
           + DRS   RKE    L    ++SP+ + + I    I +LVG L A   +
Sbjct: 671 ERDRSREIRKEAAYFLQQLCQSSPLTLQMFIACRGIPVLVGFLEADYAK 719


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.129    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,889,068
Number of Sequences: 28952
Number of extensions: 187981
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)