Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G15
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr ...    31   0.11 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.58 
SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyce...    26   5.4  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.4  

>SPAC9E9.04 |||bcap family homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
 Frame = +2

Query: 380 IGVLALFLIDAXREIR---KYSNVTDVSHTHLATEMKTHVKLFRAQRNFYIIGFAIFLTF 550
           I +L LF     R +R   +Y        T  +         F AQRN Y+ G A+FL+ 
Sbjct: 56  ICILILFADSVRRVVRVTKEYDLAIAAPSTTESARSGYKASQFYAQRNLYLCGSALFLSL 115

Query: 551 VIRXLITMLIIQDELKQKAEKIIKQAEETVKXA 649
           V+      L      + K + +  Q E +   A
Sbjct: 116 VVNRYYLALEAMIAAQDKMQALQTQVEASTNNA 148


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
 Frame = +1

Query: 220 IQWTFIAGYLYFE--IALADADDITYIQS*KMESIFQITSVFNVSRKRXCIFLCVHRCVG 393
           + W  + GY   E  I L   +DI  IQ+ +  S+F +      + ++   F C+   + 
Sbjct: 575 LNWGLVNGYPKTEGRIVLLPRNDIVLIQADQPTSVFDLCWTIKPTYEKSSNFSCLQLPIP 634

Query: 394 VVFD*CXERDTEIFKCYGREPHSFSYRNENSRQAISSPKKLL 519
           V+        T          +   Y N+NS++ +  P  LL
Sbjct: 635 VLNTPILTPVT--INIQSTTYYLIGYANQNSKKTLDQPTSLL 674


>SPCC63.12c |||20S proteasome component beta 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 380 IGVLALFLIDAXREIRKYSNVTDVSHTHLATEMKTHVKLFRAQRNFY 520
           +GV ++ L +   ++    + T +  T LAT+++T  +LFR + N Y
Sbjct: 28  LGVQSISLTNNFPKVFAMGDKTYLGLTGLATDVQTLYELFRYKVNLY 74


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 305 RWNQFFKSRLFSMFRENVXVYFYVFIGVLALFL-IDAXREI 424
           RW++FF+    ++    + + + V +G +A+F+ +D  R +
Sbjct: 436 RWHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRL 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,251
Number of Sequences: 5004
Number of extensions: 43300
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)