Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G15
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.81 
SB_12432| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +1

Query: 460 SFSYRNENSRQAISSPKKLLYYRLCNFPDIRNTXTNHNVDYTRRIKTESRKNNKTGRGDS 639
           ++SY   NS    +SP  L  ++        N+     +D+ RR +T  RKN+ +  G S
Sbjct: 210 AWSYSPSNSPTISTSPNSLEEFQFPQDHGAENSDEGIGIDFVRRDRTRKRKNSTSSTGGS 269

Query: 640 E 642
           +
Sbjct: 270 K 270


>SB_2209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +3

Query: 3   FFFYHNSRLVTRNLPDFDYSIYPQPYT*YYCN 98
           FF Y +SRL T ++ D+ YS++P+ Y+   CN
Sbjct: 35  FFRYPSSRLKTTHI-DYRYSLFPKGYSFSLCN 65


>SB_12432| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 170 SVKLTTIAPQYDYYNNY 120
           S+K T I+P YDY++NY
Sbjct: 35  SIKYTGISPDYDYWDNY 51


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 346  SRKRXCIFLCVHRCVGVVFD*CXERDTEIFKCY 444
            SR   C+F CV+  V V    C    T +F C+
Sbjct: 937  SRVFTCLFACVYLSVRVCSPVCSRAFTSLFACF 969


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,327
Number of Sequences: 59808
Number of extensions: 294756
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)