Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G15
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.      84   9e-17
AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical...    84   9e-17
U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta f...    28   6.6  

>AF304120-1|AAG50233.1|  213|Caenorhabditis elegans 4D656 protein.
          Length = 213

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 43/121 (35%), Positives = 66/121 (54%)
 Frame = +2

Query: 287 PIFSPRRWNQFFKSRLFSMFRENVXVYFYVFIGVLALFLIDAXREIRKYSNVTDVSHTHL 466
           P   P  W++ FKSRLF+   ++  +Y   F  VL +   D  RE  KY+ +        
Sbjct: 25  PWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLFILFADGVRETMKYNGLEGQMGRTA 84

Query: 467 ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRXLITMLIIQDELKQKAEKIIKQAEETVKX 646
            ++   H++LFRAQRN YI GFA+ L  VI+ ++T+L    +L+  +E  ++QAE   K 
Sbjct: 85  ESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESATKT 144

Query: 647 A 649
           A
Sbjct: 145 A 145



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 214 MSIQWTFIAGYLYFEIAL 267
           M++QWT +AG LY EIA+
Sbjct: 1   MTLQWTIVAGVLYAEIAI 18


>AC024817-36|AAF59580.1|  213|Caenorhabditis elegans Hypothetical
           protein Y54G2A.18 protein.
          Length = 213

 Score = 83.8 bits (198), Expect = 9e-17
 Identities = 43/121 (35%), Positives = 66/121 (54%)
 Frame = +2

Query: 287 PIFSPRRWNQFFKSRLFSMFRENVXVYFYVFIGVLALFLIDAXREIRKYSNVTDVSHTHL 466
           P   P  W++ FKSRLF+   ++  +Y   F  VL +   D  RE  KY+ +        
Sbjct: 25  PWIRPTLWSKLFKSRLFTALAKHAHIYSITFGFVLFILFADGVRETMKYNGLEGQMGRTA 84

Query: 467 ATEMKTHVKLFRAQRNFYIIGFAIFLTFVIRXLITMLIIQDELKQKAEKIIKQAEETVKX 646
            ++   H++LFRAQRN YI GFA+ L  VI+ ++T+L    +L+  +E  ++QAE   K 
Sbjct: 85  ESDATHHMRLFRAQRNLYISGFALLLWLVIQRIMTLLGRAAQLEAASEAAMRQAESATKT 144

Query: 647 A 649
           A
Sbjct: 145 A 145



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 214 MSIQWTFIAGYLYFEIAL 267
           M++QWT +AG LY EIA+
Sbjct: 1   MTLQWTIVAGVLYAEIAI 18


>U42436-8|AAF99897.3|  950|Caenorhabditis elegans Importin beta
           family protein 6 protein.
          Length = 950

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 299 PRRWNQFFKSRLFSMFRENVXVYFYVFIGVLALFLIDAXREIRKYSNVTD 448
           P RW+ FF    FS    +  V F+    +LA+      R+I++  N +D
Sbjct: 118 PERWSSFFNDLFFSDNINDRKVAFFYLKVLLAIDTEVVNRDIQRSKNESD 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,510,912
Number of Sequences: 27780
Number of extensions: 237569
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)