Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G15
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         21   7.8  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.8  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.8  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   7.8  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    21   7.8  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    21   7.8  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 526 RLCNFPDIRNTXTNHNVDYTRRIKTESRKNN 618
           R  NF +  N   NHN +  R       +NN
Sbjct: 413 RCANFDNQDNNHYNHNHNQARHSSKSDNQNN 443


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 152 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRV 57
           ++ +YDY NNY   +      I    LR N V
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGV 86


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 457 HSFSYRNENSRQAISSPKKLLYYRL 531
           ++++Y N N ++   +  K LYY +
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +1

Query: 457 HSFSYRNENSRQAISSPKKLLYYRL 531
           ++++Y N N ++   +  K LYY +
Sbjct: 87  NNYNYNNNNYKKLYCNNYKKLYYNI 111


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 457 HSFSYRNENSRQAISSPKKLLYYR 528
           ++++Y N N +   ++  K LYY+
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYK 343


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 466 SYRNENSRQAISSPKKLLYYRLCNFPDI 549
           +Y N N     ++  K LYY + N   I
Sbjct: 337 NYNNNNYNNNYNNNCKKLYYNIINIEQI 364


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 152 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRV 57
           ++ +YDY NNY   +      I    LR N V
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGV 86


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 152 IAPQYDYYNNYD*RLTNTVAVILCVWLRVNRV 57
           ++ +YDY NNY   +      I    LR N V
Sbjct: 55  LSGEYDYKNNYPSDIDQWHDKIFVTMLRYNGV 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,737
Number of Sequences: 438
Number of extensions: 3216
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)