Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G12
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   1.8  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.4  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   5.4  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   9.5  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +1

Query: 70  FVKVKVTYLVKMSGKNN-KAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAI 228
           F++VK+   + + G+NN K + K  +LL Q  +   S++++    GNA +  A+
Sbjct: 272 FLQVKILQFLSILGQNNPKIYDKMSDLLAQVCTNTDSSRNA----GNAILYQAV 321


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -2

Query: 424 YHQQASWTFHGQQHPPCAQQHGASTGT*CYGRQEPATRC*LPLXG*TK*LRCL 266
           Y+Q AS T  G    P     GA+      G    A+   LPL    + LRC+
Sbjct: 219 YYQAASGTSGGSSGSPVLDISGAAVALNSGGSNSSASSFYLPLDRVVRALRCI 271


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 615 CSRERHNVINCRCECTQNVETAQDDNSQEK 526
           C    +  INCRC  ++  E+A  D S  K
Sbjct: 29  CVSNENGCINCRCSPSEPHESANVDESVNK 58


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 575 SHLQLITLCLSRLHLDFLLYSPQE 646
           SH+Q+I+  +S+ H  F + +P E
Sbjct: 34  SHIQVISKSISKRHARFTILTPSE 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,369
Number of Sequences: 5004
Number of extensions: 45124
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)