Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G12
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220           27   9.8  
04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537...    27   9.8  

>08_01_0166 - 1365203-1365571,1365602-1365695,1365794-1367220
          Length = 629

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 421 HQQASWTFHG--QQHPPCAQQHGAST 350
           HQ  SW F+   QQ+PP A QH  +T
Sbjct: 262 HQLHSWYFNSSFQQNPPPAVQHSPTT 287


>04_04_0547 -
           26152892-26153194,26153248-26153329,26153349-26153707,
           26154366-26154404,26154998-26155168,26155651-26155725,
           26156858-26157055,26157208-26157402
          Length = 473

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +2

Query: 467 KRMRWXIMKLPHTQFSTITHFS*LLSS*AVSTFCVHSHLQLITLCLSRLHLDFLL 631
           K++ W +  +P T    +T++S L+++  +ST+     L  ITL +     +FL+
Sbjct: 78  KKLAWALFNVPRTSLELLTYYSRLVAT--LSTYM--KDLPSITLSMLEDEFNFLI 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,344,659
Number of Sequences: 37544
Number of extensions: 276196
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)