Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G12
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               98   5e-21
SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       29   3.3  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   7.6  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 98.3 bits (234), Expect = 5e-21
 Identities = 45/82 (54%), Positives = 56/82 (68%)
 Frame = +1

Query: 115 NNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFIX 294
           N K  +KE+ELLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  ++ I F  
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAV 62

Query: 295 XXXXXXXXXXXXYRNTKFQLKH 360
                       Y+N KFQLKH
Sbjct: 63  MTLVSTWLVAFAYKNVKFQLKH 84


>SB_36663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = -1

Query: 257 ECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLF-FPDIFTK*VTL 81
           E  +  +++G+A ++ A   +RAD+ +++  ++     S S VK +L   P+   K ++ 
Sbjct: 3   ESIVDASRLGVATSLSAETPRRADELIESANMERNKGKSRSQVKEMLLKVPEFIKKSISS 62

Query: 80  TFTNTNK 60
           T ++ ++
Sbjct: 63  TISDEDE 69


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = +3

Query: 30  SCLATEQY---AAFICVCKS*SNLFSKNVWKEQQSFYKRRRVIVARF*PECVHKIVCSLL 200
           SCL+       AAF+C   +  NLF   + K  QS     + I+ R  P C+        
Sbjct: 70  SCLSVHHIHGLAAFLCHMSTQRNLFKPVIVKSNQSHKDTAKHILLRLHPACIRGFCLRHH 129

Query: 201 RER 209
           R+R
Sbjct: 130 RQR 132


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 464 GKRMRWXIMKLPHTQFSTITHFS*LLSS 547
           GK+MR  + K P T F T+T  S LL S
Sbjct: 757 GKQMRGVMSKKPQTVFDTLTEVSRLLYS 784


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,154,352
Number of Sequences: 59808
Number of extensions: 345118
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)