Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G12
(650 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 163 4e-40
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 163 4e-40
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 163 4e-40
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 163 4e-40
D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein. 32 2.0
AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet re... 32 2.0
AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein. 32 2.0
AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribos... 32 2.0
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 3.6
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.6
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.6
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.6
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.6
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 3.6
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 163 bits (397), Expect = 4e-40
Identities = 80/168 (47%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 103 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 282
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 283 WFIXXXXXXXXXXXXXYRNTKFQLKHXXXXXXXXXXXXXMS--XXXXXXXXXXXXXXXER 456
+ Y+N KF LKH ++ ER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 457 ILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 600
ILWKKNEVA YEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 163 bits (397), Expect = 4e-40
Identities = 80/168 (47%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 103 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 282
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 283 WFIXXXXXXXXXXXXXYRNTKFQLKHXXXXXXXXXXXXXMS--XXXXXXXXXXXXXXXER 456
+ Y+N KF LKH ++ ER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 457 ILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 600
ILWKKNEVA YEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 163 bits (397), Expect = 4e-40
Identities = 80/168 (47%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 103 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 282
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 283 WFIXXXXXXXXXXXXXYRNTKFQLKHXXXXXXXXXXXXXMS--XXXXXXXXXXXXXXXER 456
+ Y+N KF LKH ++ ER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 457 ILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 600
ILWKKNEVA YEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 163 bits (397), Expect = 4e-40
Identities = 80/168 (47%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Frame = +1
Query: 103 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 282
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 283 WFIXXXXXXXXXXXXXYRNTKFQLKHXXXXXXXXXXXXXMS--XXXXXXXXXXXXXXXER 456
+ Y+N KF LKH ++ ER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 457 ILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNYIV 600
ILWKKNEVA YEATT+SIFYNN LFL +VI++SF+IL+ F PTVNYI+
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYIL 168
>D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein.
Length = 1725
Score = 31.9 bits (69), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 123 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 260
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1078 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1125
>AY339211-1|AAQ02646.1| 532|Homo sapiens nonintegrin platelet
receptor for type I collagen protein.
Length = 532
Score = 31.9 bits (69), Expect = 2.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -3
Query: 627 KKSRCSRERHNVINCRCECTQNVETAQD--DNSQEKCVIVEN*VCGSFIXCHLILFPQDS 454
K C H+ NCR CT E + D DNS +C ++ N V CH+ + +
Sbjct: 341 KVGGCRSSLHHSNNCRHCCTI-CEWSCDGLDNSTNECFVLHNWVFLKISQCHVDHIQEST 399
Query: 453 FVL 445
FVL
Sbjct: 400 FVL 402
>AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein.
Length = 1724
Score = 31.9 bits (69), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 123 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 260
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1124
>AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribosyl)
transferase protein.
Length = 1724
Score = 31.9 bits (69), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 123 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 260
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1124
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 454 RILWKKNEVAXYEATTYSIFYNNALFLTIVILSSFYILRTFTPTVNY 594
R++W T YSI+ NN L+ T + + +ILR +P Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,735,718
Number of Sequences: 237096
Number of extensions: 1594343
Number of successful extensions: 6229
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6225
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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