Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G12
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putati...    27   8.2  
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi...    27   8.2  

>At4g17530.1 68417.m02622 Ras-related GTP-binding protein, putative
           very strong similarity to RAB1C [Lotus corniculatus var.
           japonicus] GI:1370166; contains Pfam profile PF00071:
           Ras family
          Length = 202

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 272 VLISNECTLQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFV 129
           +L+ N+C L + ++   ET KAF  +    F++T   K+  N   +F+
Sbjct: 117 LLVGNKCDLTSQKVVSTETAKAFADELGIPFLET-SAKNATNVEEAFM 163


>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
           to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00240: Ubiquitin family, PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 248 LQNNQIGIAETIKAFP*KRADDFVDTFRLKSCNNNSSSFVKALLFFPDI 102
           L  N++  +  +  F  KR DD    F  K   N  +    A+L FPD+
Sbjct: 456 LNKNKVSFSALVVKFA-KRGDDHQWIFEYKEATNFEARRHLAMLLFPDV 503


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,617,275
Number of Sequences: 28952
Number of extensions: 233220
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)