Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G10
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    36   0.005
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    36   0.005
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    35   0.012
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    31   0.11 
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   2.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.2  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    25   9.5  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 114 TDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRS 245
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +3

Query: 114 TDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRS 245
           T++  RP +A++L+     + +   NP +  ++++K  GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 248
           K  + PKR MSA++ +    R K+K DNP     ++    G+ W+ +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = +3

Query: 120 KPKRPMSAYLLWLNSARSKIKDD--NPXLKVTEIAKKAGEIWRSMY--DKSEWXXXXXXX 287
           +PKRP SAY L+  + RS+IK+        V E+ K   E W S+   D+  +       
Sbjct: 116 QPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKL 175

Query: 288 XXQYIVXLESFNAN 329
              Y   + ++NA+
Sbjct: 176 REAYEEEMAAYNAS 189


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 347 EKKENPKTREESETGAKNKESETGRR 424
           +KK  P  R+E  T  K K+   GRR
Sbjct: 599 KKKSKPVNRDEDSTSGKKKQVTQGRR 624


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 612 ELSNKKVYYLNLSNKSQKEKKHSFHGPEFKMINSKTLKLKYKFKEI 475
           E +  K YY +LS  + + +KH    PE+K    K   ++ + K++
Sbjct: 53  ESAQVKKYYSDLS--ALERQKHMLENPEYKYTPKKRSTVRRRHKKV 96


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 528  ILDHEMNVFFLSGFCYLDLNNTLFCSITHNK 620
            IL  ++      GFCYL L   +F SI+ N+
Sbjct: 1063 ILSIKIEKSLYKGFCYLYLTLKVFLSISSNR 1093


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 60  TKITRFCRIKIHI*GFKMTDKPKR 131
           +K+ RFCR K H   FKM   P++
Sbjct: 26  SKVFRFCRSKCHK-NFKMKRNPRK 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,937
Number of Sequences: 5004
Number of extensions: 34962
Number of successful extensions: 109
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)