Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G10
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 47 1e-05
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 46 2e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 44 9e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 43 2e-04
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 43 2e-04
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 42 5e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 6e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 40 0.001
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 38 0.004
At3g28730.1 68416.m03587 structure-specific recognition protein ... 38 0.006
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 35 0.054
At1g65090.1 68414.m07379 expressed protein 34 0.095
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 29 2.0
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 27 8.2
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +3
Query: 120 KPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 263
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ ++ +
Sbjct: 245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKK 290
Score = 31.9 bits (69), Expect = 0.38
Identities = 11/49 (22%), Positives = 26/49 (53%)
Frame = +3
Query: 117 DKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 263
+KPK+P S+Y L+ AR + +++P + + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
Score = 31.5 bits (68), Expect = 0.51
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 126 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 248
KRP + Y+LW +++K NP E + G W+ +
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +3
Query: 120 KPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 263
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK +
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKK 299
Score = 36.3 bits (80), Expect = 0.018
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 126 KRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 248
KRP S+Y+LW +++K +NP E + G W+S+
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 30.7 bits (66), Expect = 0.88
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +3
Query: 117 DKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 263
+KPK+P S+Y L+ R K+ ++ P + W+ + ++ +
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEK 425
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 44.0 bits (99), Expect = 9e-05
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSMYDKSE 263
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D +
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEK 85
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 278
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 279 XXXXXQYIVXLESFNAN 329
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 278
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 279 XXXXXQYIVXLESFNAN 329
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSMYDKSE 263
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D +
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEK 82
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 114 TDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM 248
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 278
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ +
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 279 XXXXXQYIVXLESFN 323
+YI ++ +N
Sbjct: 90 ESRKTEYIKNVQQYN 104
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 38.3 bits (85), Expect = 0.004
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = +3
Query: 114 TDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSMYDKSE 263
++KPKRP++A+ ++++ R K ++ + AK GE W+S+ ++ +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEK 161
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLKVTEIAKKAGEIWRSM 248
K + PKR MS ++ + R IK ++P + E+ K G+ WR M
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 34.7 bits (76), Expect = 0.054
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +3
Query: 108 KMTDKPKRPMSAYLLWLNSARSKIKDDNPXLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 278
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M +++ +
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
Query: 279 XXXXXQYIVXLESFN---ANG 332
+Y V ++ +N ANG
Sbjct: 89 QSKKTEYAVTMQQYNMELANG 109
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.9 bits (74), Expect = 0.095
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 335 RSRTEKKENPKTREESETGAKNKESETGR 421
+ + EK+E P+TR E ETGA E+ TG+
Sbjct: 174 QEQPEKREAPETRREGETGATKIETSTGK 202
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 326 KWRRSRTEKKENPKTREESETGAKNKESET 415
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 588 YLNLSNKSQKEKKHSFHGPEFKMINSKTLKLKY-KFKEI 475
YLNLS KE +FH K++N +TL K+ K +E+
Sbjct: 608 YLNLSKTQVKELPKNFH----KLVNLETLNTKHSKIEEL 642
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,652,030
Number of Sequences: 28952
Number of extensions: 171603
Number of successful extensions: 532
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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