Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G09
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    27   1.6  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   3.6  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   3.6  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   8.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   8.4  

>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 359 RNIEGMRLSTQTAPTFSIFSPPYRRDL 279
           RN++ +RL  + APT  +++ P RR +
Sbjct: 6   RNLKSVRLPFRRAPTLPLYNVPVRRSI 32


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -3

Query: 359 RNIEGMRLSTQTAPTFSIFSPPYRRDLHQVHI*DVFALCLYQQGFFLIVHPTSAVPPTQL 180
           RN+     +  +AP+FS  S     DL       V+A CL ++    IV P   +P  +L
Sbjct: 15  RNLLLNASTVSSAPSFSFVSGNESADLDSCASSIVYAYCLQRKQLGRIVVPFFNIPRKEL 74

Query: 179 K 177
           +
Sbjct: 75  R 75


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -3

Query: 218 IVHPTSAVPPTQLKRDTYIHQ*KLYSSFQNDXSFVLSVIDARTIYNRVIMGL 63
           +V    A+P        YI   KLYSS          V+DA  IY+  ++ L
Sbjct: 303 LVENAKALPLVGEYLSDYISHRKLYSSETQSQRLKREVLDANKIYSESVVDL 354


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -2

Query: 282 PSPSAHLRCLCIVPLSARVFSNCASDICGAANTVKTRHVHTPMKTIFFISK-*YXVRAVR 106
           PSPS+    LC +   + +  N  S+I  +  T+  ++    ++ I ++ K  + +++ +
Sbjct: 432 PSPSSQFPVLCTLENPSSIEYNIISNILFSIPTIPLKNASPIVELISYVMKPEFFMKSQQ 491

Query: 105 NR--C*NHLQS-SYYGIKNISNRLN 40
           N   C   L S  Y+ I N ++ L+
Sbjct: 492 NASDCKKLLSSFLYFLINNFNDNLH 516


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 380 ECAATPARNIEGMRLSTQTAPTFSIFSPPY 291
           + AA PA    G  +S  T+P  + F+P Y
Sbjct: 74  QMAAAPAHPTTGYNVSRVTSPNVANFAPGY 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,453
Number of Sequences: 5004
Number of extensions: 48813
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)