Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G09
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g45207.2 68414.m05186 remorin family protein Since this genom...    29   1.8  
At5g13740.1 68418.m01599 sugar transporter family protein contai...    29   2.4  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    28   5.4  
At1g79820.2 68414.m09323 hexose transporter, putative similar to...    27   7.2  
At1g79820.1 68414.m09322 hexose transporter, putative similar to...    27   7.2  

>At1g45207.2 68414.m05186 remorin family protein Since this genomic
           sequence region is unfinished, the annotated gene may be
           missing a stop codon or start codon
          Length = 555

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 149 LYSSFQNDX--SFVLSVIDARTIYNRVIMGLKIFPTG*IRVTPERQCS 12
           L SS Q+D   S   +  DA+ +  R  M  ++ P G IR +PERQCS
Sbjct: 341 LASSSQDDIHESMKDAATDAQAVSRRD-MATQMSPEGSIRFSPERQCS 387


>At5g13740.1 68418.m01599 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 486

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 344 CPQCSVQESRHIRRTLXYIQRNYPW 418
           CP C V++ + +RR   Y++ ++ W
Sbjct: 19  CPGCKVEQMKQLRRGYPYLELSFVW 43


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 236 DKGTMQRHLRCALGEGPCDMVGRRLRTLAPFVLRGACPQCS 358
           D G    H+ C           R+ RTL PF+ +G+ P  S
Sbjct: 2   DSGVKLEHMNCFQLSYQYSWTTRKKRTLKPFMSKGSSPSSS 42


>At1g79820.2 68414.m09323 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 482 SNVNLKFY*IFSRIVVRXSPIPMGSYVVCMXVCGECAATPA 360
           S +N  FY  FS  V + + +P  S  +C+ VC    +T A
Sbjct: 308 SGINAVFY--FSSTVFKKAGVPSASANICVGVCNLLGSTVA 346


>At1g79820.1 68414.m09322 hexose transporter, putative similar to
           hexose transporter GI:8347246 from (Solanum tuberosum);
           contains Pfam profile PF00083: major facilitator
           superfamily protein
          Length = 495

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 482 SNVNLKFY*IFSRIVVRXSPIPMGSYVVCMXVCGECAATPA 360
           S +N  FY  FS  V + + +P  S  +C+ VC    +T A
Sbjct: 308 SGINAVFY--FSSTVFKKAGVPSASANICVGVCNLLGSTVA 346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,158
Number of Sequences: 28952
Number of extensions: 251559
Number of successful extensions: 488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)