Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G08
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   203   4e-53
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.31 
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical...    27   6.7  
Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  203 bits (496), Expect = 4e-53
 Identities = 88/144 (61%), Positives = 116/144 (80%)
 Frame = +1

Query: 34  MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 214 ARVRKNTEARRKGRHCGFGKRRGTANARMPQXELWVQRQRVXXXXXXXYXTAKXIDRHLY 393
            R R+  EARRKGRH G+GKRRGTANARMP+  LW++R RV       Y  AK +D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 394 HSLYMKAKGNVFXNKRVLMEYIHR 465
           H LY++AKGN F NK+ L+EYI +
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFK 144


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 130  ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 264
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 142 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 255
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AL132876-10|CAC48129.1|  106|Caenorhabditis elegans Hypothetical
           protein Y105E8A.11 protein.
          Length = 106

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 7   CCVGSHRVRMSSLKLQKRLAASVMRCGKKKV 99
           CC G H++  + LK+ K L   +  C + +V
Sbjct: 23  CCGGEHKMSEAELKMSKLLTEGIDGCTRVEV 53


>Z81508-5|CAB04138.1|  357|Caenorhabditis elegans Hypothetical
           protein F20E11.7 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 58  RLAASVMRCGKKKVWLDPNEI 120
           ++A + + CG  K+W DPN I
Sbjct: 171 QIAETSVTCGDDKIWQDPNGI 191


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 325 FVPIVX-SVAYAHWQYLFSYQSHSDDPFYVPL 233
           F PI+  +V  A W  +F  Q+H ++ F  P+
Sbjct: 344 FAPIILLAVTTAAWLLIFGSQAHKEERFLFPI 375


>AC006762-6|ABJ99063.1|  547|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6b protein.
          Length = 547

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 254 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 102
           RP   AS F + RA  W A+  ++  P+L+ ++ F   ++  ++ + + +N
Sbjct: 262 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 312


>AC006762-5|AAF60553.2|  684|Caenorhabditis elegans Hypothetical
           protein Y42G9A.6a protein.
          Length = 684

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -1

Query: 254 RPFLRASVFLRTRAREWTATGFLMTRPSLIILRMFCLELVFAISLISFGSN 102
           RP   AS F + RA  W A+  ++  P+L+ ++ F   ++  ++ + + +N
Sbjct: 399 RPRFGASFFQQIRALTWRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNN 449


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,154,521
Number of Sequences: 27780
Number of extensions: 228122
Number of successful extensions: 626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)