Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G08
(467 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 202 1e-52
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 199 9e-52
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 197 3e-51
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 38 0.003
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 2.7
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 3.6
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 3.6
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 4.8
At3g22940.1 68416.m02890 F-box family protein-related contains T... 27 8.4
At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)... 27 8.4
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 202 bits (492), Expect = 1e-52
Identities = 90/144 (62%), Positives = 110/144 (76%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 214 ARVRKNTEARRKGRHCGFGKRRGTANARMPQXELWVQRQRVXXXXXXXYXTAKXIDRHLY 393
+R R EA+RKGRH G+GKR+GT AR+P LW++R RV Y +K IDRH+Y
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 394 HSLYMKAKGNVFXNKRVLMEYIHR 465
H +YMK KGNVF NKRVLME IH+
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHK 144
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 199 bits (485), Expect = 9e-52
Identities = 88/144 (61%), Positives = 111/144 (77%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 214 ARVRKNTEARRKGRHCGFGKRRGTANARMPQXELWVQRQRVXXXXXXXYXTAKXIDRHLY 393
+R R+ A+RKGRH G+GKR+GT AR+P LW++R RV Y K IDRH+Y
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 394 HSLYMKAKGNVFXNKRVLMEYIHR 465
H +YMK KGNVF NKRVLME IH+
Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHK 144
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 197 bits (481), Expect = 3e-51
Identities = 88/144 (61%), Positives = 109/144 (75%)
Frame = +1
Query: 34 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 213
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 214 ARVRKNTEARRKGRHCGFGKRRGTANARMPQXELWVQRQRVXXXXXXXYXTAKXIDRHLY 393
+R RK A+ KGRH G+GKR+GT AR+P LW++R RV Y K ID+H+Y
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 394 HSLYMKAKGNVFXNKRVLMEYIHR 465
H +YM+ KGNVF NKRVLME IH+
Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHK 144
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +1
Query: 370 KXIDRHLY-HSLYMKAKGNVFXNKRVLMEYIHR 465
K ID+ +Y H ++MK KG V+ NK VLME +H+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHK 61
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 172 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTAN 291
D + KK + + + ++RKN + RR+G G G RR A+
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRRTGAD 116
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 194 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 99
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 110 GSNHTFFLPHRITEAASLFCSLRELI 33
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 172 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 285
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At3g22940.1 68416.m02890 F-box family protein-related contains
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 412
Score = 26.6 bits (56), Expect = 8.4
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +2
Query: 242 VERVVTVALVREEVLPMRVCH 304
++ VVT+A VREE L VCH
Sbjct: 246 LDGVVTLACVREEKLAALVCH 266
>At2g41450.1 68415.m05121 GCN5-related N-acetyltransferase (GNAT)
family protein low similarity to Swift [Xenopus laevis]
GI:14164561; contains Pfam profiles PF00583:
acetyltransferase, GNAT family, PF00533: BRCA1 C
Terminus (BRCT) domain
Length = 991
Score = 26.6 bits (56), Expect = 8.4
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 31 RMSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDG 177
+ S+ L++ AS+ K++ + N +EIA T+ Q+ K KDG
Sbjct: 248 KCSTPGLKRSWEASLSSLQSKRIRANNNNNSEIAKTDLAQSSAKQSKDG 296
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,632,051
Number of Sequences: 28952
Number of extensions: 218899
Number of successful extensions: 526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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