Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_G07
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268 29 2.3
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 29 2.3
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 29 3.0
01_06_1259 - 35810926-35811777 29 3.0
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 29 4.0
07_03_1632 + 28271559-28271645,28272641-28272713,28273030-282733... 28 5.3
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 5.3
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 27 9.2
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 27 9.2
>04_03_0592 - 17678172-17679415,17679751-17679897,17680656-17681268
Length = 667
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 38 AINSHGNSGIACCKQVLXKYL-HYKLFSELCLTT 136
+IN G SGI CC+ + K + HYK++ + T
Sbjct: 69 SINGEGCSGIGCCQTAIPKGIKHYKVWFDTHFNT 102
>01_05_0078 +
17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +2
Query: 152 KRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQKI 253
+++ ++D+ HN SRK ++V LPPE+++
Sbjct: 679 EKEHSMDESNSTHNRSRKRTPDQVDGSLPPEKQV 712
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/52 (26%), Positives = 31/52 (59%)
Frame = +2
Query: 215 NEVGLQLPPEQKILLSLLMMNKHXXLNEVEADQKVPRKKRESRARVKVEVVD 370
+EV ++ ++K + L+ + + + ++KV ++K+E + + KVEVVD
Sbjct: 321 DEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKKVEVVD 372
>01_06_1259 - 35810926-35811777
Length = 283
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Frame = +1
Query: 133 DGSTVVEKKGRGR------PKANGTQPESKELKKRGRPPAATRTKDSAKSSD 270
+ S+ K+GR R P+ + T P + + K+RGRPP +A+S++
Sbjct: 189 NASSQPRKRGRPRKDATMYPRKDATIPANTQPKRRGRPPKNRNLSGNAQSAE 240
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 130 DDGSTVVEKKGRGRP--KANGTQPESKELKKRGRPPAATRTKDSAKSSDD 273
D GS E G+ K GT+ +SKEL+K+ + TKD +K + D
Sbjct: 33 DQGSEKKEMSGKNIKSIKETGTKGQSKELQKK-ESKSRKSTKDKSKKNKD 81
>07_03_1632 +
28271559-28271645,28272641-28272713,28273030-28273361,
28273455-28274791,28275451-28275848,28275963-28277644,
28277727-28277884,28278645-28278802,28279110-28279270,
28279826-28280014
Length = 1524
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 152 KRKDAVDQKPME-HNLSRKNLKNEVGLQLPPEQKILLSLL 268
K+K AVD K + N +KNE+ ++ P QKI+L L
Sbjct: 224 KKKKAVDTKRSKSRNDVSAVMKNEIDIETPAGQKIVLEAL 263
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 281 ACSSSEDLAESFVLVAAGGRPRFL 210
AC S ED SF +GGRP+F+
Sbjct: 72 ACKSFEDFDISFKSTRSGGRPKFV 95
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +1
Query: 157 KGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 279
K + K ++P +K+ K + +PP ++ DDE+
Sbjct: 153 KSKSSNKTKSSEPRAKQPKPQPQPPVKNEGREEEGGPDDEE 193
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 154 KKGRGRPKANGTQPESKELKKRGR 225
KKG+G K + +P+SK+ KK R
Sbjct: 8 KKGKGSGKPDQLRPKSKQFKKHSR 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,550
Number of Sequences: 37544
Number of extensions: 247184
Number of successful extensions: 851
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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