Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G07
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       27   0.20 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   2.4  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   9.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 130 DDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDE 276
           +D  T +E+ GRG+ + +G          RGR     + KD   ++D E
Sbjct: 69  NDKKTDIEETGRGKGRGHGKGGSRGRGGNRGRTGFNNKNKDGDDNNDYE 117


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 475 QVFIGXQIXHXVHPRPVXXQ*KQHLFLEVVHLCVAVH 365
           +VF+G +  H    RP+     QHLF+E+      +H
Sbjct: 536 RVFLGPKHDH--QGRPISISKNQHLFVELDQFIQNLH 570


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 260 LAESFVLVAAGGRPRFLSSFD 198
           +A +F+L    G PR +SSFD
Sbjct: 328 MAVAFMLSHPFGTPRIMSSFD 348


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -3

Query: 231 WRPTSFFK 208
           WRP SFFK
Sbjct: 119 WRPDSFFK 126


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/35 (28%), Positives = 13/35 (37%)
 Frame = +1

Query: 169 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDD 273
           R K     PES++              D  +SSDD
Sbjct: 82  RSKTKSKSPESRDRSNTSNTSKTFILSDKLESSDD 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,727
Number of Sequences: 438
Number of extensions: 2689
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)