Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G03
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   1.4  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    26   3.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   7.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.6  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +3

Query: 270  PNELYRRLLPAMLFVLTFVTVMTMLLIYM 356
            P+  Y+RL+  +LF     T++T+LL+++
Sbjct: 954  PSNFYKRLIALLLFCWICSTLVTVLLVFV 982


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 447 IAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGXELY 560
           I+Y++ L      K  DV+TTPT+ V V++   G EL+
Sbjct: 83  ISYLKLLRHPHIIKLYDVITTPTDIVMVIE-YAGGELF 119


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 557 QFLSKNGIQNLHLFCRCGNNILRFRTS 477
           QFL+KNG+Q L+        + RF+++
Sbjct: 46  QFLAKNGVQILYAIYLLEKELARFKSA 72


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 107 NTDQDNPPPPAXRTWPSYGQT 169
           N  Q +PPPP     P YG T
Sbjct: 58  NEFQASPPPPLGYVTPEYGAT 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,615
Number of Sequences: 5004
Number of extensions: 46212
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)