Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G03
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985...    29   1.9  
07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646     28   4.4  
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826...    28   5.9  
10_01_0036 + 427678-428029,431043-431968                               28   5.9  
04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871           28   5.9  
10_05_0024 + 8203010-8203948,8204042-8204683                           27   7.7  
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217...    27   7.7  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    27   7.7  

>07_03_1512 +
           27288779-27289222,27298101-27298399,27298499-27298589,
           27298701-27298766,27299151-27302660,27311604-27312224
          Length = 1676

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 411 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSI 542
           E   + QGS ++  Y+   +  AR  P+D+ T    Q K L+ +
Sbjct: 454 EFRALNQGSRSVTEYLHDFNRLARYAPEDIRTDEERQEKFLEGL 497


>07_03_0323 - 16773826-16774569,16774976-16775211,16775337-16775646
          Length = 429

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 429 QGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSI 542
           QGS  +  Y+ + +  AR  P+DV T    Q K L+ +
Sbjct: 342 QGSRTVTEYLHEFNRLARYAPEDVRTDEERQEKFLEGL 379


>10_05_0026 +
           8262237-8262899,8263300-8263509,8263599-8265480,
           8265508-8265704,8275672-8275824
          Length = 1034

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 411 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSI 542
           E   + QGS ++  Y+ + +  AR  P+DV      Q K L+ +
Sbjct: 351 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGL 394


>10_01_0036 + 427678-428029,431043-431968
          Length = 425

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 89  LFKFIVNTDQDNPPPPAXRTW 151
           LF F V+ D D PPPP    W
Sbjct: 43  LFFFRVSGDDDQPPPPDQTKW 63


>04_01_0515 + 6740112-6740757,6755297-6755570,6755595-6755871
          Length = 398

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 411 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVL 533
           E   + QG+  +  Y+ + +  AR +P+DV T   +Q K L
Sbjct: 113 EFRALHQGNRTVTEYLHEFNRLARYEPEDVRTDAEKQEKFL 153


>10_05_0024 + 8203010-8203948,8204042-8204683
          Length = 526

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 125 PPPPAXRTWPSYGQTPRT*TQPNRQAC 205
           P PP  R WP  G  P+   +P+   C
Sbjct: 40  PLPPGPRGWPVLGNLPQLGDKPHHTMC 66


>07_03_1137 -
           24220597-24220619,24220694-24221414,24221513-24221731,
           24221805-24222505,24223127-24223376
          Length = 637

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 126 HLHLLXEPGQAMDKPPEPKPNLIDKLVI 209
           +LH +   G   +KPP  +P ++D +V+
Sbjct: 242 YLHYITRQGSGPEKPPISRPLILDSIVL 269


>04_01_0293 +
           3881375-3883698,3906619-3907636,3907820-3908309,
           3914729-3914823,3914854-3915213
          Length = 1428

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 411 ELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSI 542
           E   + QGS ++  Y+ + +  AR  P+DV      Q K L+ +
Sbjct: 152 EFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNGEERQEKFLEGL 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,798
Number of Sequences: 37544
Number of extensions: 328566
Number of successful extensions: 877
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)