Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G03
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.37 
SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_19309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_48803| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_44177| Best HMM Match : FG-GAP (HMM E-Value=9.6)                    27   7.9  
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   7.9  

>SB_29676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 531

 Score = 31.9 bits (69), Expect = 0.37
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 226 HIALDSHCRHS*KLHRMSCTDDCY 297
           H AL   CRHS    R++C+DDC+
Sbjct: 495 HTALKGGCRHSRWPRRITCSDDCF 518


>SB_22059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +3

Query: 195 DKLVIIFAESTHSPRFTLPAFMKAPPNELYR-RLLPAMLFV---LTFVTVMTMLLIYMDT 362
           D L++I A +    RF L   +  PP++  + R   A +FV   + FV   T++ +Y+  
Sbjct: 149 DVLLVIMAVAV--TRFLLRGQINPPPSQQQQWRFQDAKMFVGIIVLFVVPYTLISVYLIL 206

Query: 363 VALGAQQFRLNMT 401
            A+G  QF   ++
Sbjct: 207 DAIGVVQFHFTVS 219


>SB_16164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 107 NTDQDNPPPPAXRTWPSYGQTPRT*TQPNRQ-ACNNFCRIDT*PSIHIAGIHESSTE 274
           N D D+PP P   +  +   TP+     N+Q A +N  ++ T  + H    H+ S +
Sbjct: 51  NDDSDSPPDPNPISGGTMDDTPKAKPSKNKQNAIDNIVKLPTVKAKHHPDEHDMSAK 107


>SB_19309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +3

Query: 168 PPEPKPNLIDKLVI--IFAESTHSPRFTLPAFMKAPPNELYRRLLPAMLFVLTFVTVMTM 341
           PP P      K V   IFA   H  R   P F + P +      + A+   LT    +T+
Sbjct: 17  PPRPTVKFQQKTVKFHIFAVEFHQKRSNYPTFGRIPTSRSNFTGMIALTLTLTLTLTLTL 76

Query: 342 LLIYMDTVAL 371
            L    T+ L
Sbjct: 77  TLTLTLTLTL 86


>SB_48803| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 110 TDQDNPPPPAXR--TWPSYGQTPRT*TQPNRQACNN 211
           T Q++ PPPA +    P YGQT +   Q  R A  N
Sbjct: 127 TKQESNPPPARQKCAQPKYGQTVKPRPQSKRTAGTN 162


>SB_44177| Best HMM Match : FG-GAP (HMM E-Value=9.6)
          Length = 78

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +2

Query: 473 DCSFETSRCCYH-TYRTGEGFGFHFWXG 553
           D SFE + CC+H  +  G  FG+ +  G
Sbjct: 1   DSSFELTDCCHHLNFVIGNDFGYDYVIG 28


>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1810

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 414  LARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVK 527
            LAR+ Q  A       Q+H+  RSKP   V+ P + ++
Sbjct: 1743 LARVDQAKAKRYESQPQVHVKQRSKPVKQVSKPAKPIR 1780


>SB_5376| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1705

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 374 SQCNCVHVN*EHRHDSHKCQNKEHC 300
           ++CN + ++  H H +H CQ+  +C
Sbjct: 185 NECNSLALSSNHSHYAHNCQSDANC 209



 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 374 SQCNCVHVN*EHRHDSHKCQNKEHC 300
           ++CN + ++  H H +H CQ+  +C
Sbjct: 625 NECNSLALSSNHSHYAHNCQSDANC 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,844,601
Number of Sequences: 59808
Number of extensions: 366191
Number of successful extensions: 897
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)