Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G03
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 93  SNLS*IQIKITHLHLLXEPGQAMDKPPEPKPNLI 194
           S L  +QI I  + ++ +P +AM   P  + NL+
Sbjct: 773 SGLVFVQILINGVWMIIDPAKAMHHYPTREDNLL 806


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -1

Query: 257 ECRQCESRAMCRFGKN 210
           EC+ C S+  C F ++
Sbjct: 436 ECKTCNSKTKCCFAQD 451


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 417 ARIGQGSAALIAYVRQLHLTARSKPQDVVTTPT 515
           AR  QGS  L+      + T R     V+TT T
Sbjct: 759 ARSPQGSQGLLQCATSNYSTTRWPATSVITTTT 791


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 362 SCIGSPTVPLKHD 400
           +C+GS   PLK D
Sbjct: 191 ACVGSAYTPLKED 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,539
Number of Sequences: 438
Number of extensions: 3880
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)