Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_G03
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g28890.1 68415.m03511 protein phosphatase 2C family protein /...    30   1.2  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid ...    29   2.1  
At4g24910.1 68417.m03566 hypothetical protein contains Pfam prof...    28   4.9  

>At2g28890.1 68415.m03511 protein phosphatase 2C family protein /
           PP2C family protein similar to protein phosphatase-2c
           (GI:3608412) [Mesembryanthemum crystallinum]; contains
           Pfam PF00481 : Protein phosphatase 2C domain
          Length = 654

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +3

Query: 372 GAQQFRLNMTRDYELARIGQGSAALIAYVRQLHLTARSKPQDVVTTPTEQVKVLDSIFGX 551
           G+ QF+ + +      R+G    +L+  +R+      ++ Q+ +  P + VK  D +FG 
Sbjct: 155 GSDQFQRSFSHGLANLRVGSRKGSLVRVLRRAISKTITRGQNSIVAPIKPVKEPDWVFGS 214

Query: 552 E 554
           +
Sbjct: 215 D 215


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 201 LVIIFAESTHSPRFTLPAFMKAPPNELYRRLLPAMLFVLTF 323
           L+++     H PR T P ++   PN++   ++  ++F L F
Sbjct: 19  LLVLQVSGQHQPRTTAPPYIAQRPNQVPAVIIAMLMFTLLF 59


>At5g07990.1 68418.m00930 flavonoid 3'-monooxygenase / flavonoid
           3'-hydroxylase (F3'H) / cytochrome P450 75B1 (CYP75B1) /
           transparent testa 7 protein (TT7) identical to SP|Q9SD85
           Flavonoid 3'-monooxygenase (EC 1.14.13.21) (Flavonoid
           3'-hydroxylase) (AtF3'H) (Cytochrome P450 75B1)
           (TRANSPARENT TESTA 7 protein) {Arabidopsis thaliana};
           similar to gi:10334806, gi:10334808
          Length = 513

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 83  ISLFKFIVNTDQDNPPPPAXRTWPSYGQTPRT*TQPNR 196
           + +F    N   +N  PP    WP  G  P   T+P+R
Sbjct: 18  LRIFSHRRNRSHNNRLPPGPNPWPIIGNLPHMGTKPHR 55


>At4g24910.1 68417.m03566 hypothetical protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 315

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
 Frame = +3

Query: 270 PNELYRRLLPAMLFVLTFVTVMTMLLI-YMD---TVALGAQQFRLNMTRDYELARIGQGS 437
           P    R+L+P ++FVL+ ++V+ +L I Y     + +  +  FRL+     +  R  +G 
Sbjct: 39  PKFTVRKLIPLLIFVLSSLSVLRLLRISYKSSSKSQSSSSTTFRLSPADSSQQLRANEGP 98

Query: 438 AALI 449
            AL+
Sbjct: 99  TALM 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,330,729
Number of Sequences: 28952
Number of extensions: 257434
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)