Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F23
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    50   3e-07
SPBC19G7.13 |trf1||telomeric DNA binding factor Trf1|Schizosacch...    27   1.8  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    27   2.3  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   2.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   7.2  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   7.2  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 20/40 (50%), Positives = 30/40 (75%)
 Frame = +2

Query: 95  MKIYKDIITGDEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 214
           M +YKD+I+GDE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 1   MLLYKDVISGDELVSDAYDLKEVDDIVYEADCQMVTVKQG 40



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 24/48 (50%), Positives = 30/48 (62%)
 Frame = +2

Query: 470 AGLRNFSFFTGESMDCDGMVAMMEYXXFDGTQIPIMMFFKHGLQXEKF 613
           A  +++ F+ GESMD D MV +M Y   DG   P M+FFK GL  EKF
Sbjct: 123 ANFKDYDFYIGESMDPDAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPBC19G7.13 |trf1||telomeric DNA binding factor
           Trf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -1

Query: 238 LKPSIWISALCSRHQPTGHFVNNFI--DQFHFVSVREHLITSDNVLIDLHFDGLEAIKNN 65
           LK   +ISA+    +P G  +N+    D  H   +R +    D+ L  +    +E     
Sbjct: 223 LKTQAYISAMAQAERPKGDILNDLFPSDMAHRFLIRRN-AKLDDKLTYVEKQIIEKCTAR 281

Query: 64  KNRKNGFSPQ 35
           K R   FSPQ
Sbjct: 282 KERLANFSPQ 291


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 564 KYQS*CFSNMVYXKRNSKCXIRNNSIIP 647
           +Y S CF N ++ K + K    N+SI+P
Sbjct: 763 QYHSFCFINNLFSKSSLKAISSNDSIVP 790


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 154 HFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQT 32
           +F  + + L T +  LI   +  +E+IK  KNR +GF   T
Sbjct: 503 YFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYT 543


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 132  ISSPVIMSL*IFILMDWRRLKII 64
            ISSP I  + IFILM+  RL +I
Sbjct: 1220 ISSPTIFVINIFILMNQERLNLI 1242


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 651 SWELLSYFLXNI*NFSXCRPCLKNIMIGICVPSKXXY 541
           S+ELL+       NFS  R CL+N ++  CVP    Y
Sbjct: 782 SFELLNNLTEARKNFSNYRDCLENCVLP-CVPFLGVY 817


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 311 VVQXYVNSALDGRVRALVSLFSRRIKTLDLDISPVL 204
           V++  +NS LDG +  +    S R +T  LD+S ++
Sbjct: 341 VLEDQMNSLLDGSLYGICRPLSSRAQTSVLDLSDIV 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,362,968
Number of Sequences: 5004
Number of extensions: 43127
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)