Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F23
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    37   0.016
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    29   3.2  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   3.2  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   9.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = +2

Query: 476 LRNFSFFTGESMDCDGMVAMMEYXXFDGTQIPIMMFFKHGLQXEK 610
           L++  FF GESM  DG +    Y   DG   P  ++F HGL+  K
Sbjct: 125 LKDLQFFVGESMHDDGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167



 Score = 35.9 bits (79), Expect = 0.028
 Identities = 13/38 (34%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
 Frame = +2

Query: 95  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTR 205
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQ 38



 Score = 33.5 bits (73), Expect = 0.15
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +3

Query: 195 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLXETYAFGDKKSYTXXXX 368
           W  +   D+ I G NPSAE    DEG D      VDI    RL E   F DKK +     
Sbjct: 35  WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92

Query: 369 XXXXXXXXXXEXKAPDQXEVFKTNMNKVMKDILGQV 476
                     +    ++ E FK N+    K +LG++
Sbjct: 93  RYIKNLSAKLD---AEKQEEFKKNIEGATKYLLGKL 125


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 204 EHRADIQIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXETYAFGDKK 347
           + +  + I   N S EE +E  ++A    VD+ LN    E   +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 594 PCL-KNIMIGICVPSKXXYSIMATMPSQSIDSPVKKLKF 481
           PCL K+   GI  P+K    ++ TMPS S  + + +  F
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKIPQSSF 238


>06_01_1128 +
          9300144-9300273,9300340-9300472,9300585-9300656,
          9300783-9300926,9301453-9301524,9301584-9301677,
          9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 42 EKPFFRFLLFLIASNPS 92
          E PFF FLL L++S+PS
Sbjct: 2  EAPFFFFLLLLVSSSPS 18


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,780,739
Number of Sequences: 37544
Number of extensions: 260799
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)