Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F23
         (652 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g16640.1 68416.m02127 translationally controlled tumor family...    39   0.003
At3g05540.1 68416.m00607 translationally controlled tumor family...    36   0.018
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    29   2.0  
At1g63910.1 68414.m07236 myb family transcription factor (MYB103...    29   2.7  
At4g29060.1 68417.m04157 elongation factor Ts family protein sim...    28   4.7  
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi...    28   4.7  

>At3g16640.1 68416.m02127 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 168

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 15/37 (40%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
 Frame = +2

Query: 95  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVT 202
           M +Y+D++TGDE+ SD++  K ++  +++EV G+ VT
Sbjct: 1   MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVT 37



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +3

Query: 195 W*REHRADIQIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLXETYAFGDKKSY 353
           W      D+ I G NPSAEE   DEG D + +  VDI    RL E   + DKK +
Sbjct: 35  WVTVGAVDVNI-GANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTY-DKKGF 87



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 476 LRNFSFFTGESMDCDGMVAMMEYXXFDGTQIPIMMFFKHGLQXEK 610
           L +F FF GE M  D  +    Y   +G+  P  ++F HGL+  K
Sbjct: 125 LSDFQFFVGEGMHDDSTLVFAYYK--EGSTNPTFLYFAHGLKEVK 167


>At3g05540.1 68416.m00607 translationally controlled tumor family
           protein similar to translationally controlled tumor
           protein GB:AAD10032 from [Hevea brasiliensis]
          Length = 156

 Score = 36.3 bits (80), Expect = 0.018
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +2

Query: 95  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQG 214
           M +Y+DI+TGDE+ SD++  K ++  +++EV G+  +  +G
Sbjct: 1   MLVYQDILTGDELLSDSFPYKEIENGMLWEVEGKNPSGEEG 41



 Score = 34.7 bits (76), Expect = 0.054
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 222 QIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLXETYAFGDKKSY 353
           ++EG NPS EE   DEG D      VDI    RL E  +F DKK +
Sbjct: 30  EVEGKNPSGEEGGEDEGVDDQAVKVVDIIDTFRLQEQPSF-DKKQF 74



 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 437 KHEQSNERHPRAGLRNFSFFTGESMDCDGMVAMMEYXXFDGTQIPIMMFFKHGLQXEK 610
           KH +S  +   + L++F FF GESM+ +    +  Y   +G   P  ++  +GL+  K
Sbjct: 99  KHIESATKFLMSKLKDFQFFVGESMEGEEGSLVFAYYR-EGATDPTFLYLAYGLKEIK 155


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 133 HLITSDNVLIDLHFDGLEAIKNNKNRKNGFSPQTTKPG 20
           H  T+D  L  LH + +E I  N+N+K   +  TTK G
Sbjct: 384 HFFTADERLNQLH-EAVEDIPGNENQKTVLTSPTTKEG 420


>At1g63910.1 68414.m07236 myb family transcription factor (MYB103)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 370

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 205 SRHQPTGHFVNNFIDQFHFVSVREHLITSDNVLIDLHFDGLEAIKNNKNRKN 50
           SRHQP+   V    D     +  E   T+ + + +LHFDG     N  N  N
Sbjct: 124 SRHQPSVTTVTLNADTTSIATTIEASTTTTSTIDNLHFDGFTDSPNQLNFTN 175


>At4g29060.1 68417.m04157 elongation factor Ts family protein
           similar to SP|P35019 Elongation factor Ts (EF-Ts)
           {Galdieria sulphuraria}; contains Pfam profiles PF00627:
           UBA/TS-N domain, PF00889: Elongation factor TS, PF00575:
           S1 RNA binding domain
          Length = 953

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 228 EGFNPSAEEADEGTDSAVESG 290
           EGF P+AEEAD+G  S +  G
Sbjct: 272 EGFLPTAEEADDGIGSMMMGG 292


>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
           to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00240: Ubiquitin family, PF00632: HECT-domain
           (ubiquitin-transferase)
          Length = 873

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 329 VCFX*PVVQXYVNSALDGRVRALVSLFSRRIKTLDLDISPVLSS 198
           V F  P+V    ++AL+  +R L  LF   + T+DL +  V SS
Sbjct: 369 VAFPIPIVLPMQSTALEAEIRHLHRLFGSLLTTMDLCMCRVESS 412


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,214,903
Number of Sequences: 28952
Number of extensions: 219981
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)