Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F20
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   3e-31
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         33   0.20 
SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)             31   0.81 
SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)                      30   1.9  
SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)               29   2.5  
SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)                  29   3.3  
SB_46271| Best HMM Match : DUF479 (HMM E-Value=2.2)                    29   3.3  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         29   3.3  
SB_15487| Best HMM Match : DUF479 (HMM E-Value=2.2)                    29   3.3  

>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score =  132 bits (318), Expect = 3e-31
 Identities = 58/99 (58%), Positives = 75/99 (75%)
 Frame = +2

Query: 350 AKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTPRWNKVIHCLLPPGVNTIYLEIFD 529
           AKL KNYG+TRMDPY R+ VG+ ++ET T  +G   PRWNK+I   LP GV+TIY+EIFD
Sbjct: 1   AKLAKNYGITRMDPYCRITVGNQVFETPTAHNGANNPRWNKLIASTLPKGVSTIYVEIFD 60

Query: 530 ECSFTMDELIAWTHITIPQAVLNGETHEXWYPLNGKQGD 646
           E SF++DE +AW  + I + VLNGET + WY L+GKQG+
Sbjct: 61  ERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 18/49 (36%), Positives = 28/49 (57%)
 Frame = +2

Query: 314 PMTARLSVTIAQAKLVKNYGLTRMDPYVRVRVGHCIYETHTDPSGGKTP 460
           P + RL + IA+A+++K+        YV V  GH I+  H +P+  KTP
Sbjct: 530 PTSDRL-LEIAEARILKHLKAHYERKYVHVDKGHKIWTLHFNPNADKTP 577


>SB_4303| Best HMM Match : Defensin_beta (HMM E-Value=0.85)
          Length = 203

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
 Frame = -3

Query: 445 ARISVSLVYTMSNTHTNIRVHTS*SIIFNKLSL----SYSDT*SRCHWRATLWYCSTI*L 278
           +R+++SL+  MS++H  +  HT   ++ + L+L    S+S   + CH R  + + +   L
Sbjct: 81  SRVTLSLLCYMSHSHCCVTCHTRIVVLHDTLALLCYMSHSHCCATCHTRTVVLHVTLALL 140

Query: 277 --LL*SKCSFIIRVHTVRSSISTKKTCW 200
             +  S C    R  TV   ++    C+
Sbjct: 141 CYMTHSHCCVTCRTRTVVLHVALALLCY 168


>SB_27194| Best HMM Match : C2 (HMM E-Value=1e-22)
          Length = 139

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 314 PMTARLSVTIAQAK-LVKNYGLTRMDPYVRVRV 409
           P+++RLSVT+ QA+ L K   L   DPYV+V +
Sbjct: 13  PLSSRLSVTVLQARNLPKISHLNIGDPYVKVEL 45


>SB_2292| Best HMM Match : Extensin_2 (HMM E-Value=0.033)
          Length = 867

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 101 ALFSIKYLNNIVVTNLMISVINAKNKNNSR 12
           A+F  KYL NI +T   + V+N K+++  R
Sbjct: 603 AMFRDKYLKNIEITKKTLEVVNTKDQDGLR 632


>SB_52292| Best HMM Match : WD40 (HMM E-Value=1.6e-09)
          Length = 743

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
 Frame = +2

Query: 416 CIYETHTDPSGGKTPRW--NKVIHCLLPPGVNTIYLEIFDE----CSFTMDELIAWTHIT 577
           CIY++ T  S  K   W  NKV+  L PP  N  YL   D+    C+ +  ++  W H +
Sbjct: 135 CIYKSSTAGSD-KEYSWQKNKVMAILQPPAENNFYLGTTDDLLAGCT-SKGKVAMWKHAS 192

Query: 578 IPQAVLNGETHEXW 619
                   E  E W
Sbjct: 193 PKVKGRKEEGEEMW 206


>SB_46271| Best HMM Match : DUF479 (HMM E-Value=2.2)
          Length = 454

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 283 IWCCSTTKWPSNDSETKCHYSSS 351
           ++ CS T+WP N+S+T+ H SSS
Sbjct: 218 VFDCSLTQWP-NNSDTRMHPSSS 239


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
 Frame = +2

Query: 350  AKLVKNYGLTRMDPYVRVRVGHCIYETHTDP--SGGKTPRWNKVIHCLLPPGVNTIYLEI 523
            A  V ++  T +  Y  ++    I E  ++P  +GG         HC  PPG N    EI
Sbjct: 1162 ADQVNSFSCTCVSGYTGLKCETDINECASNPCVNGGTCTDLVNGFHCTCPPGYNGTKCEI 1221

Query: 524  -FDECS 538
              DEC+
Sbjct: 1222 DIDECA 1227


>SB_15487| Best HMM Match : DUF479 (HMM E-Value=2.2)
          Length = 508

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +1

Query: 283 IWCCSTTKWPSNDSETKCHYSSS 351
           ++ CS T+WP N+S+T+ H SSS
Sbjct: 218 VFDCSLTQWP-NNSDTRMHPSSS 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,104,680
Number of Sequences: 59808
Number of extensions: 385739
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)