Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F17
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.62 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   2.5  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 469 EPLYTLALPFSFRWTRSFTLILQAYDDYXYSEPEA 573
           E L TLA+    +W     L+ + +D+  Y  PE+
Sbjct: 16  EKLNTLAISVMNQWPGVRLLVTEGWDEEGYHTPES 50


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 100 HTQPGPSAHTXWHARTDSSALHVRPPP 20
           +T P  +A + +HA   S  LH  PPP
Sbjct: 141 YTDPAFAA-SIFHAAATSLPLHYPPPP 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,903
Number of Sequences: 336
Number of extensions: 959
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)