Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F17
         (582 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         47   1e-05
SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)               28   6.4  
SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)                   28   6.4  
SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)                 27   8.5  
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)                       27   8.5  
SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)                   27   8.5  

>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +1

Query: 232 GVFELQILEFTNYRLEVXXXXXXXXXXXXXXXXXXXSHPCRTRFTLCLKEYQS-AAAPGG 408
           G FE+Q +   N   E+                      C T FT+CLK     A +  G
Sbjct: 26  GNFEVQFVSIQNVAGELRNGKCCDGSRTIYGSRSHCLDACETFFTICLKPSDGQAGSNSG 85

Query: 409 SCSFGRAASPVLGTDSFTLAEPL-YTLALPFSFRWTRS 519
           +C+FG+  + VLG +SFT+ +     ++L F+F W ++
Sbjct: 86  TCTFGQYTTKVLGGNSFTVTDSSEQIVSLRFTFSWLKA 123


>SB_31707| Best HMM Match : Extensin_2 (HMM E-Value=0.19)
          Length = 309

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 140 PRPLPPRRPHVAHTHTAR 87
           P P PPRRP  AH +  R
Sbjct: 215 PHPYPPRRPEYAHPYPPR 232


>SB_25216| Best HMM Match : DUF1589 (HMM E-Value=8.4)
          Length = 313

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
 Frame = -3

Query: 151 SSQRPARSLRAARMSRTHTQPGPSAHTXWHARTDSSAL--------HVRPPP 20
           S  R ARS+R A   R H +P P A       T + ++        HVRP P
Sbjct: 153 SRTRKARSIRQAYADREHVRPDPYARLTQIENTKARSIRQAYADREHVRPDP 204


>SB_50857| Best HMM Match : RVT_1 (HMM E-Value=9.8e-33)
          Length = 829

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 358 RFTLCLKEYQSAAAPGGSCSFGRAASPVLGTDSFTLAEPLYTLALPFSFRW 510
           R+  C K   +   P  + SF       +GTD F L +  Y + + ++ RW
Sbjct: 675 RYQTCAKLRPARREPLMALSFPNLTWSRVGTDLFELEQTDYLIVVDYASRW 725


>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
          Length = 487

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/17 (64%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -3

Query: 112 MSRTHTQPGPSA-HTXW 65
           +SRTHT+PGP A H  W
Sbjct: 225 LSRTHTKPGPGASHHPW 241


>SB_20630| Best HMM Match : rve (HMM E-Value=2.3e-19)
          Length = 698

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 358 RFTLCLKEYQSAAAPGGSCSFGRAASPVLGTDSFTLAEPLYTLALPFSFRW 510
           R+  C K   +   P  + SF       +GTD F L +  Y + + ++ RW
Sbjct: 304 RYQTCAKLRPARREPLMALSFPNLTWSRVGTDLFELEQTDYLIVVDYASRW 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,057,460
Number of Sequences: 59808
Number of extensions: 153202
Number of successful extensions: 576
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)