Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F15
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    85   5e-18
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    85   5e-18
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    26   3.4  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   5.9  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   5.9  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +2

Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 291 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H  A  K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 58  LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
           +R +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 37/47 (78%), Positives = 41/47 (87%)
 Frame = +2

Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
           VIVKFLTVM KHGYI EF  +DDHR+GKIV+ L GR+NKCGVISPRF
Sbjct: 33  VIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQLNGRINKCGVISPRF 79



 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 33/52 (63%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
 Frame = +3

Query: 291 FDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
           F+V + DIE+W N LLPSRQ G +VLTTS GIM H  A  K  GGKILGFF+
Sbjct: 79  FNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 41.1 bits (92), Expect = 8e-05
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +1

Query: 58  LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
           +R +VL+D L +I NAE+RG+RQVLIRP
Sbjct: 2   VRQSVLADCLNNIVNAERRGRRQVLIRP 29


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 25  RYEARAKS*P-W-LRMNVLSDALKSIHNAEKRGKRQVLIRPXF 147
           RY +   + P W LR+N+L   L ++H AEKR   +  I+  F
Sbjct: 120 RYRSGIATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPF 162


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 271 WCHFTSFLMFPSTILKDGLICSPHDSLV 354
           WC F SF   P  I+KD    SP +SL+
Sbjct: 135 WCLFPSFKETPHWIVKD---LSPAESLI 159


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 348 FGYLVLTTSGGIMDHEXAXXKHLGGKIL 431
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,060
Number of Sequences: 5004
Number of extensions: 29921
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)