Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F15
(475 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 90 7e-19
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 90 7e-19
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 57 6e-09
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 38 0.004
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 3.3
12_02_0312 + 17395716-17398112 27 7.7
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 90.2 bits (214), Expect = 7e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 81.0 bits (191), Expect = 4e-16
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.4 bits (110), Expect = 3e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+DALK+++NAEKRGKRQVLIRP
Sbjct: 2 VRVSVLNDALKTMYNAEKRGKRQVLIRP 29
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 90.2 bits (214), Expect = 7e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEFVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 70.1 bits (164), Expect = 8e-13
Identities = 33/48 (68%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKIL 431
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK L
Sbjct: 79 FDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
Score = 47.6 bits (108), Expect = 5e-06
Identities = 20/28 (71%), Positives = 28/28 (100%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+DALK+++NAEKRGKRQV+IRP
Sbjct: 2 VRVSVLNDALKTMYNAEKRGKRQVMIRP 29
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 57.2 bits (132), Expect = 6e-09
Identities = 22/50 (44%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 DVPINDIERW-TNLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFF 440
D+ +IE++ +LP+RQ+GY+V+TT G++DHE A +++GG++LG+F
Sbjct: 79 DIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
Score = 51.6 bits (118), Expect = 3e-07
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 289
V+V FL +M GYI +FE++D HR GKI V L GR+ C ++ R
Sbjct: 32 VMVSFLNIMKHRGYIKKFEVIDPHRVGKINVELHGRIKDCKALTYR 77
Score = 31.5 bits (68), Expect = 0.36
Identities = 12/24 (50%), Positives = 20/24 (83%)
Frame = +1
Query: 70 VLSDALKSIHNAEKRGKRQVLIRP 141
+L+DAL+++ NAE+RGK L++P
Sbjct: 5 ILNDALRTMVNAERRGKATALLQP 28
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +2
Query: 212 VDDHRAGKIVVNLTGRLNKCGVISPR 289
VDDH++G+I++ GRLNK GVIS R
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFR 937
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +1
Query: 31 EARAKS*PWLRMNVLSDALKSIHNAEKRGKRQVLIRPXF 147
E R S L+ L+ + K H+ +KRGKR+V RP F
Sbjct: 183 ERRRLSIGSLKKKALNASNKLTHSLKKRGKRKVENRPSF 221
>12_02_0312 + 17395716-17398112
Length = 798
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 192 TSESLKSLMITELARLL*ISQAD*TSVVSFHLVFDVPINDIERWTNLLPSRQFGYLVLTT 371
+ ES K L + L + L D ++ + IND E NLLPS + G ++L T
Sbjct: 243 SGESNKQLTLEALQKKLHELSGDKRYLLVLDDISHDNINDWEELMNLLPSGRSGSMILIT 302
Query: 372 S 374
+
Sbjct: 303 T 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,946,946
Number of Sequences: 37544
Number of extensions: 190518
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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