Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F15
         (475 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             46   2e-05
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.052
SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_21396| Best HMM Match : CHGN (HMM E-Value=3e-16)                    27   7.9  
SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.9  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 58  LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
           +R+NVL+DAL SI NAEKRGKRQV IRP
Sbjct: 2   VRVNVLNDALVSICNAEKRGKRQVQIRP 29



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN-LTGRLNKCGVISPR 289
           VIVKFLTVMMKH        V   R G++V    +G L+  GV+  R
Sbjct: 33  VIVKFLTVMMKH--------VAQPRIGEMVTRPCSGALSAAGVVVTR 71


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 34.3 bits (75), Expect = 0.052
 Identities = 15/21 (71%), Positives = 18/21 (85%), Gaps = 1/21 (4%)
 Frame = +3

Query: 291 FDVPINDIERW-TNLLPSRQF 350
           FDV + DIE+W +NLLPSRQF
Sbjct: 8   FDVGVRDIEQWASNLLPSRQF 28


>SB_26917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
 Frame = +1

Query: 226 SWQDCCKS----HRQTKQVWCHFTSFLMFPSTIL 315
           S++ C KS    H +T  +W HF  FL F + +L
Sbjct: 246 SFKSCFKSMFKIHTETGNIWTHFIGFLAFIAAML 279


>SB_4378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/55 (34%), Positives = 25/55 (45%)
 Frame = +1

Query: 238 CCKSHRQTKQVWCHFTSFLMFPSTILKDGLICSPHDSLVT*SLQQVVASWTMXKP 402
           CC + R T   + H TS+L    TI      CSP D LV   L++    W+   P
Sbjct: 10  CCHTRRVTVITFVHTTSYL----TIHSASNSCSPGDPLV---LERPPPRWSSNSP 57


>SB_21396| Best HMM Match : CHGN (HMM E-Value=3e-16)
          Length = 519

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 241 CKSHRQ-TKQVWCHFTSFLMFPSTILKDGLICSPHDSL 351
           C+S+ + +KQV+      L  P  + +DG+I SP + L
Sbjct: 398 CRSYTEPSKQVYYPMVFSLYNPRNVYEDGMIPSPQEQL 435


>SB_7139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 112 RGKRQVLIRPXFQSHR*VFNSDDEARLH 195
           RG R ++  P  Q HR V++ DD A ++
Sbjct: 527 RGDRAMIYLPLNQEHRPVYHRDDRAMIY 554


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,645,161
Number of Sequences: 59808
Number of extensions: 214528
Number of successful extensions: 1026
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)