Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F15
(475 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 93 1e-19
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 29 1.7
Z81506-10|CAB04123.2| 270|Caenorhabditis elegans Hypothetical p... 28 3.9
AL023836-2|CAC42371.1| 270|Caenorhabditis elegans Hypothetical ... 28 3.9
Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical ... 27 6.9
AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical ... 27 6.9
U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical pr... 27 9.1
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 92.7 bits (220), Expect = 1e-19
Identities = 43/46 (93%), Positives = 44/46 (95%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 289
VIV+FLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNK VISPR
Sbjct: 33 VIVRFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKASVISPR 78
Score = 85.8 bits (203), Expect = 1e-17
Identities = 42/60 (70%), Positives = 50/60 (83%), Gaps = 1/60 (1%)
Frame = +3
Query: 267 SVVSFHLVFDVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
SV+S L ++ +ND+E++TN LLPSRQFGYL+LTTS GIMDHE A KHLGGKILGFFF
Sbjct: 73 SVISPRL--NIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
Score = 50.8 bits (116), Expect = 5e-07
Identities = 23/28 (82%), Positives = 27/28 (96%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+RMNVL+DAL +I+NAEKRGKRQVLIRP
Sbjct: 2 VRMNVLADALNAINNAEKRGKRQVLIRP 29
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 297 HQKRGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 193
H +G+ + LP RF+T+L AL T+ NS M
Sbjct: 318 HPSKGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351
>Z81506-10|CAB04123.2| 270|Caenorhabditis elegans Hypothetical
protein F16H6.10 protein.
Length = 270
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 328 LVHLSISLMGTSKTR*NDTTLV*SACEIYNNLASSVIINDFKLS 197
L HLSI++ S D T + I + SS+I+NDF L+
Sbjct: 88 LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131
>AL023836-2|CAC42371.1| 270|Caenorhabditis elegans Hypothetical
protein F16H6.10 protein.
Length = 270
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 328 LVHLSISLMGTSKTR*NDTTLV*SACEIYNNLASSVIINDFKLS 197
L HLSI++ S D T + I + SS+I+NDF L+
Sbjct: 88 LSHLSITISEESSLNKTDVTFLKHLKRILDLRPSSLIVNDFTLT 131
>Z81528-7|CAB04286.1| 259|Caenorhabditis elegans Hypothetical
protein F35E2.8 protein.
Length = 259
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 134 MRTCLFPRFSALCIDFKASLNTFIRSHG*DLA 39
MR C P A+CI+ K S + F H DLA
Sbjct: 51 MRICEHPAAIAVCINSKTSQSRFELRHNLDLA 82
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +2
Query: 341 TTVWL-PSPYNKWW 379
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>AF016433-5|AAN84877.1| 1039|Caenorhabditis elegans Hypothetical
protein C09H5.2b protein.
Length = 1039
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 276 SFHLVFDVPINDIERWTNLLPSRQ 347
SFH+VF+VP N + ++ +L + +
Sbjct: 503 SFHVVFEVPFNSVRKYHLILATTE 526
>AF016433-4|AAB65385.2| 1054|Caenorhabditis elegans Hypothetical
protein C09H5.2a protein.
Length = 1054
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +3
Query: 276 SFHLVFDVPINDIERWTNLLPSRQ 347
SFH+VF+VP N + ++ +L + +
Sbjct: 503 SFHVVFEVPFNSVRKYHLILATTE 526
>U40060-5|AAA81143.2| 690|Caenorhabditis elegans Hypothetical
protein F38B6.6 protein.
Length = 690
Score = 26.6 bits (56), Expect = 9.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 55 WLRMNVLSDALKSIHNAEKRGKRQVLIRP 141
W+ + + LK + AEK K +LIRP
Sbjct: 503 WMNLGISQMNLKKYYEAEKSLKNSLLIRP 531
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,389,296
Number of Sequences: 27780
Number of extensions: 164164
Number of successful extensions: 280
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -