Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P04_F_F15
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   5.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 232 ASSVIINDFKLSDVTVLHHH 173
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 226 SWQDCCKSHRQTKQVWCHFTSFLMF 300
           S+  CC + R++  +   F SFL+F
Sbjct: 66  SFFGCCGAIRESHCMTITFASFLLF 90


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 265 QVWCHFTSFLMFPSTILKDGLICSPH 342
           Q W  +   L FPS    DG+    H
Sbjct: 334 QQWNSYWGILGFPSAPTIDGIFLPKH 359


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +1

Query: 265 QVWCHFTSFLMFPSTILKDGLICSPH 342
           Q W  +   L FPS    DG+    H
Sbjct: 334 QQWNSYWGILGFPSAPTIDGIFLPKH 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,079
Number of Sequences: 438
Number of extensions: 1960
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)