Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fe100P04_F_F15
(475 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 90 8e-19
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 90 8e-19
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 90 8e-19
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 90 8e-19
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 87 8e-18
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 62 2e-10
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 60 6e-10
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi... 27 4.9
At3g09510.1 68416.m01130 hypothetical protein 27 8.6
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 89.8 bits (213), Expect = 8e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 80.6 bits (190), Expect = 5e-16
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 79 FDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 89.8 bits (213), Expect = 8e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/52 (67%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
FDV + +IE WT LLPSRQFG++VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 79 FDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/28 (71%), Positives = 27/28 (96%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+D LKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDGLKSMYNAEKRGKRQVMIRP 29
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 89.8 bits (213), Expect = 8e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 80.6 bits (190), Expect = 5e-16
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 79 FDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 89.8 bits (213), Expect = 8e-19
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFL VM KHGYIGEFE VDDHR+GKIVV L GRLNKCGVISPRF
Sbjct: 33 VIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRF 79
Score = 80.6 bits (190), Expect = 5e-16
Identities = 36/52 (69%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
FDV + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 79 FDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
Score = 48.8 bits (111), Expect = 2e-06
Identities = 21/28 (75%), Positives = 28/28 (100%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R++VL+DALKS++NAEKRGKRQV+IRP
Sbjct: 2 VRISVLNDALKSMYNAEKRGKRQVMIRP 29
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 86.6 bits (205), Expect = 8e-18
Identities = 38/47 (80%), Positives = 41/47 (87%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
VI+KFLTVM KHGYI EFE VDDHR+GKIVV L GRLN CGVISPR+
Sbjct: 39 VIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRY 85
Score = 78.2 bits (184), Expect = 3e-15
Identities = 34/52 (65%), Positives = 43/52 (82%), Gaps = 1/52 (1%)
Frame = +3
Query: 291 FDVPINDIERWT-NLLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
+D+ + +IE WT LLPSRQFGY+VLTTS GIMDHE A K++GGK+LGFF+
Sbjct: 85 YDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
Score = 43.6 bits (98), Expect = 7e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +1
Query: 58 LRMNVLSDALKSIHNAEKRGKRQVLIRP 141
+R +VL+D LKS+ NAEK+GKRQV+IRP
Sbjct: 8 VRASVLNDCLKSMSNAEKQGKRQVMIRP 35
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 61.7 bits (143), Expect = 2e-10
Identities = 26/51 (50%), Positives = 40/51 (78%), Gaps = 1/51 (1%)
Frame = +3
Query: 294 DVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFFF 443
DV +IE++T LP+RQ+GY+V+TT GI+DHE A +++GG++LGFF+
Sbjct: 79 DVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Score = 48.8 bits (111), Expect = 2e-06
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 289
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R
Sbjct: 32 VMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYR 77
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +1
Query: 70 VLSDALKSIHNAEKRGKRQVLIRP 141
+L+DAL++I NAE+RGK V ++P
Sbjct: 5 ILNDALRTIVNAERRGKASVELKP 28
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 60.5 bits (140), Expect = 6e-10
Identities = 26/50 (52%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Frame = +3
Query: 294 DVPINDIERWTN-LLPSRQFGYLVLTTSGGIMDHEXAXXKHLGGKILGFF 440
DV N+I ++T LP+RQ+GY+V+TT GI+DHE A +++GG++LGFF
Sbjct: 79 DVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
Score = 48.0 bits (109), Expect = 3e-06
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +2
Query: 152 VIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPR 289
V+ FL +M + GYI F++ D HR G+I V+L GR+N C ++ R
Sbjct: 32 VMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYR 77
Score = 33.5 bits (73), Expect = 0.075
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +1
Query: 70 VLSDALKSIHNAEKRGKRQVLIRP 141
+L+DAL++I NAEKRGK V ++P
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKP 28
>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
histidine--tRNA ligase, putative similar to SP|P12081
Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
PF00587: tRNA synthetase class II core domain (G, H, P,
S and T), PF03129: Anticodon binding domain
Length = 479
Score = 27.5 bits (58), Expect = 4.9
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 155 IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRF 292
IVK LT ++ IG++E+ +HR K+ L G L CGV +F
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKF 215
>At3g09510.1 68416.m01130 hypothetical protein
Length = 484
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 273 VSFHLVFDVPINDIERWTNLLPSRQFGYL 359
+SFH + DI W N S QFG++
Sbjct: 415 ISFHSSLANHLEDISFWANKFASIQFGFI 443
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,932,638
Number of Sequences: 28952
Number of extensions: 156578
Number of successful extensions: 271
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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